BenoitMorel / AleRaxLinks
Gene tree - species tree reconciliation from gene tree distributions
☆30Updated 3 weeks ago
Alternatives and similar repositories for AleRax
Users that are interested in AleRax are comparing it to the libraries listed below
Sorting:
- ☆22Updated 11 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Automatic evaluation of HGTs☆29Updated 4 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 3 months ago
- ☆20Updated 9 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- ☆26Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- Helper scripts for making phylogenies☆15Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 7 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆28Updated 8 months ago
- Bacterial GWAS analysis☆40Updated last month
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- ☆25Updated 6 years ago
- Prophage Activity Estimator☆26Updated last year
- Discover and annotate the virome☆43Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 8 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last week
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- Extract metadata from biosamples in NCBI☆15Updated 4 years ago