BenoitMorel / AleRaxLinks
Gene tree - species tree reconciliation from gene tree distributions
☆30Updated 3 weeks ago
Alternatives and similar repositories for AleRax
Users that are interested in AleRax are comparing it to the libraries listed below
Sorting:
- ☆22Updated 11 years ago
- Bacterial GWAS analysis☆40Updated last month
- Automatic evaluation of HGTs☆29Updated 4 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆28Updated 8 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- Discover and annotate the virome☆43Updated 2 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- ContScout sequence contamination filter tool☆20Updated last month
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Helper scripts for making phylogenies☆15Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last week
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- IslandPath standalone software☆32Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Genome size estimation from long read overlaps☆57Updated 2 months ago
- Gene-flank analysis tool☆27Updated 6 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 3 months ago
- Extract metadata from biosamples in NCBI☆15Updated 4 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- ☆43Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆22Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Calculate assocations between genes and traits☆23Updated 3 months ago