BenoitMorel / AleRaxLinks
Gene tree - species tree reconciliation from gene tree distributions
☆35Updated 2 weeks ago
Alternatives and similar repositories for AleRax
Users that are interested in AleRax are comparing it to the libraries listed below
Sorting:
- Bacterial GWAS analysis☆46Updated last month
- Genome-Genome circle synteny☆25Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 7 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 8 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated 2 weeks ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Dinoflagellate Annotation Workflow☆15Updated 3 years ago
- Multi-genome synteny block visualization tool☆50Updated last month
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated this week
- Automatic evaluation of HGTs☆30Updated 10 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆42Updated 2 years ago
- Calculate assocations between genes and traits☆29Updated 8 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆41Updated 2 weeks ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- IslandPath standalone software☆34Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- Discover and annotate the virome☆54Updated last month
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆37Updated 2 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- Phyling: phylogenetic inference from annotated genomes☆27Updated 2 weeks ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 4 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Genomewide Epistasis Analysis on Bacteria☆15Updated 6 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Helper scripts for making phylogenies☆15Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- ☆22Updated 11 years ago