BenoitMorel / AleRax
Gene tree - species tree reconciliation from gene tree distributions
☆27Updated 5 months ago
Alternatives and similar repositories for AleRax:
Users that are interested in AleRax are comparing it to the libraries listed below
- Automatic evaluation of HGTs☆28Updated 2 months ago
- ☆22Updated 11 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated last year
- Multi-genome synteny block visualization tool☆32Updated 2 months ago
- ContScout sequence contamination filter tool☆20Updated 2 months ago
- Helper scripts for making phylogenies☆16Updated 9 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- Bacterial GWAS analysis☆39Updated 3 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 7 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- Discover and annotate the virome☆39Updated 5 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated 2 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 6 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated 3 weeks ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 9 months ago
- Genome-Genome circle synteny☆25Updated last year
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆14Updated 3 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 3 weeks ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- ☆20Updated 6 months ago
- starfish: a modular toolkit for giant mobile element annotation☆29Updated 3 months ago
- An R package to infer and analyze synteny networks from protein sequences☆29Updated 3 months ago