BenoitMorel / AleRax
Gene tree - species tree reconciliation from gene tree distributions
☆19Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for AleRax
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 5 months ago
- Automatic evaluation of HGTs☆25Updated 2 months ago
- ContScout sequence contamination filter tool☆16Updated last month
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- ☆21Updated 10 years ago
- Dinoflagellate Annotation Workflow☆12Updated 2 years ago
- ☆10Updated 9 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated 3 weeks ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆32Updated last year
- Domain based annotation of transposable elements☆19Updated last month
- Calculate assocations between genes and traits☆19Updated 3 weeks ago
- Codon-Aware Multiple Sequence Alignments☆19Updated last week
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆44Updated 5 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆19Updated 4 years ago
- Genomewide Epistasis Analysis on Bacteria☆13Updated 2 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆24Updated 2 years ago
- Genome alignment and synteny plots☆27Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆25Updated 3 weeks ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 6 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 2 months ago
- Genome-Genome circle synteny☆23Updated 11 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆24Updated 5 months ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆14Updated last year
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- Chromosome-level synteny plotting using orthologous regions☆28Updated 2 months ago
- Bacterial GWAS analysis☆32Updated last month
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 3 weeks ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last week