Gene tree - species tree reconciliation from gene tree distributions
☆44Sep 14, 2026Updated this week
Alternatives and similar repositories for AleRax
Users that are interested in AleRax are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Apr 11, 2026Updated 5 months ago
- ☆82May 2, 2026Updated 4 months ago
- Drawing reconciled phylogenetic trees allowing 1, 2 or 3 reconcillation levels☆25Oct 24, 2025Updated 10 months ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆13Jun 19, 2025Updated last year
- Helper scripts for making phylogenies☆15Jul 9, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆55May 14, 2025Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆24May 14, 2023Updated 3 years ago
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 26, 2026Updated last month
- tree visualization for tree + annotation data☆61Jun 17, 2025Updated last year
- IQ-TREE version 3: software for phylogenetics☆164Updated this week
- Detection of outlier genes and species in phylogenomics☆19Dec 14, 2025Updated 9 months ago
- ASTRAL for PaRalogs and Orthologs☆24Sep 13, 2022Updated 4 years ago
- ☆18Jan 29, 2025Updated last year
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆12Jun 23, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆258Jun 25, 2026Updated 2 months ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆14Mar 14, 2024Updated 2 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆13Jul 11, 2026Updated 2 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- ☆18Feb 16, 2026Updated 7 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 9 months ago
- ☆42May 19, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆27Jun 20, 2023Updated 3 years ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Aug 28, 2026Updated 3 weeks ago
- Algorithm For Gene Order Reconstruction in Ancestors☆86Jul 8, 2026Updated 2 months ago
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆21Apr 24, 2024Updated 2 years ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆27Jul 10, 2026Updated 2 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆34Nov 2, 2025Updated 10 months ago
- An R package to infer and analyze synteny networks from protein sequences☆43Jul 23, 2025Updated last year
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆80Sep 30, 2024Updated last year
- Phylogenetic profiling with orthology data☆13Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Linear-time rooting of phylogenetic trees☆18Jun 12, 2023Updated 3 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆85Sep 8, 2025Updated last year
- ☆21Jun 20, 2022Updated 4 years ago
- Sorting and subsampling phylogenomic datasets☆35Apr 9, 2025Updated last year
- HyPhy standalone analyses☆56Jan 5, 2026Updated 8 months ago
- ☆23Jan 29, 2024Updated 2 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year