BioinformaticsToolsmith / Red
Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
☆15Updated 9 months ago
Alternatives and similar repositories for Red:
Users that are interested in Red are comparing it to the libraries listed below
- Toolkit for evolutionary analyses of linkage groups☆26Updated 7 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆20Updated 4 months ago
- ☆27Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆13Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆30Updated last week
- Chromosome-level synteny plotting using orthologous regions☆29Updated 5 months ago
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆29Updated 2 months ago
- assembly evaluation tool☆34Updated 2 years ago
- ☆39Updated 2 years ago
- Diploid genome assembly analysis tools☆14Updated 5 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 7 months ago
- ☆20Updated 6 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated last year
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆9Updated 2 years ago
- Modified TIR-Learner for Rice genome☆12Updated 5 years ago
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated last month
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆16Updated 4 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- Plant genome assembly and annotation pipeline using snakemake☆38Updated last year
- ☆17Updated last year
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago