BioinformaticsToolsmith / Red
Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
☆15Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for Red
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆25Updated last month
- Toolkit for evolutionary analyses of linkage groups☆23Updated 4 months ago
- ☆24Updated 10 months ago
- ☆39Updated 2 years ago
- ☆33Updated 8 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆34Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 5 months ago
- Likelihood-based Selective Sweep Detection☆36Updated last year
- ☆36Updated last year
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆19Updated 4 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆29Updated 2 years ago
- Genome Annotation Pipeline☆32Updated 3 months ago
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆20Updated 2 months ago
- R package to draw syntenic plots in 3 different styles☆39Updated 11 months ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆28Updated 2 months ago
- Domain based annotation of transposable elements☆19Updated last month
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆28Updated last year
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆12Updated 9 months ago
- Statistics and analysis for variation graphs☆31Updated this week
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- ☆30Updated 2 weeks ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆9Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago