DendrouLab / panpipesLinks
Multi-modal single cell analysis pipelines
☆62Updated last month
Alternatives and similar repositories for panpipes
Users that are interested in panpipes are comparing it to the libraries listed below
Sorting:
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Updated last year
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Updated last month
- Non-parametric density inference for single-cell analysis.☆73Updated 8 months ago
- Analyzing cellular niches in spatial transcriptomics data☆34Updated last year
- ☆36Updated 11 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- Cell-type Relationship Analysis Workflow Done Across Distances☆40Updated 2 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 3 months ago
- Single cell omics biology annotations☆53Updated 9 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated this week
- A modular tool for proportion analysis in single-cell sequencing data☆24Updated 4 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- ☆45Updated last week
- Information-based dimensionality reduction☆29Updated last year
- ☆66Updated 2 years ago
- ☆22Updated 3 years ago
- ☆49Updated this week
- ☆62Updated 8 months ago
- ☆62Updated last year
- CAST package☆42Updated last year
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆42Updated 6 months ago
- Gene group activity utility functions for Scanpy☆100Updated last year
- ☆56Updated last year
- ☆48Updated 3 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆97Updated 8 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 7 months ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆35Updated 11 months ago
- Unified access to several second-generation deconvolution methods☆91Updated last month
- Molecular interactions inference from single-cell multi-omics data☆30Updated 3 weeks ago