DendrouLab / panpipesLinks
Multi-modal single cell analysis pipelines
☆59Updated last week
Alternatives and similar repositories for panpipes
Users that are interested in panpipes are comparing it to the libraries listed below
Sorting:
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 10 months ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 7 months ago
- ☆44Updated last week
- ☆53Updated 8 months ago
- Non-parametric density inference for single-cell analysis.☆72Updated last month
- Cell-type Relationship Analysis Workflow Done Across Distances☆33Updated last month
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 6 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆43Updated 2 years ago
- ☆26Updated 4 months ago
- Information-based dimensionality reduction☆29Updated 6 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated 3 weeks ago
- ☆39Updated 9 months ago
- ☆60Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆61Updated last week
- Pan-Cancer Single Cell Classifier☆73Updated last year
- ☆59Updated 10 months ago
- Gene group activity utility functions for Scanpy☆79Updated 6 months ago
- Multiview Intercellular SpaTial modeling framework☆61Updated last month
- Gene regulatory network containing signed transcription factor-target gene interactions☆84Updated last month
- Unified access to several second-generation deconvolution methods☆73Updated this week
- Single cell omics biology annotations☆51Updated 2 months ago
- ☆44Updated 8 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 2 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated last month
- Using BCR and expression for sequence embedding☆23Updated last month
- ☆41Updated 3 weeks ago
- ☆22Updated 2 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆57Updated last month