Weakly supervised learning uncovers phenotypic signatures in single-cell data
☆41Jun 7, 2026Updated 3 weeks ago
Alternatives and similar repositories for multimil
Users that are interested in multimil are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 3 years ago
- ☆67Sep 13, 2024Updated last year
- ☆16Sep 1, 2023Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆84Feb 17, 2025Updated last year
- Code and documentation for the curation of cellxgene datasets☆57Jun 23, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆109Jun 22, 2026Updated last week
- ☆16Dec 18, 2024Updated last year
- Multigrate: multiomic data integration for single-cell genomics☆34Jun 22, 2026Updated last week
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 6 months ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated 2 years ago
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆63Updated this week
- Code used to benchmark Xenium☆86Apr 10, 2026Updated 2 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 7 months ago
- parallel differential expression for single-cell perturbation sequencing☆25Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆33Jul 9, 2025Updated 11 months ago
- scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled cluster…☆38Mar 30, 2026Updated 3 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- ☆23Jan 6, 2026Updated 5 months ago
- a dataloader to work with large single cell datasets from lamindb☆40May 20, 2026Updated last month
- Pytorch implementation of EpiFoundation☆27Feb 25, 2025Updated last year
- ☆10Apr 28, 2023Updated 3 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆15Mar 23, 2024Updated 2 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆198Jan 30, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆35Mar 16, 2026Updated 3 months ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆33Aug 20, 2025Updated 10 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Aug 28, 2023Updated 2 years ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆44Jun 11, 2026Updated 2 weeks ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆70Jun 22, 2026Updated last week
- Easy single cell analysis platform for enrichment☆227Apr 3, 2026Updated 2 months ago
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated last year
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆17Jul 12, 2024Updated last year
- Python package to interactively annotate histological images within a jupyter notebook☆18Oct 20, 2025Updated 8 months ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆378Updated this week
- CellNavi is a deep learning framework designed to predict genes driving cellular transitions.☆50Mar 4, 2025Updated last year
- ☆47Jan 28, 2026Updated 5 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- ☆11May 6, 2021Updated 5 years ago