Weakly supervised learning uncovers phenotypic signatures in single-cell data
☆41Jun 7, 2026Updated last month
Alternatives and similar repositories for multimil
Users that are interested in multimil are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 3 years ago
- ☆67Sep 13, 2024Updated last year
- Metric Space Magnitude Computations☆15Jun 30, 2026Updated 2 weeks ago
- ☆16Sep 1, 2023Updated 2 years ago
- Code and documentation for the curation of cellxgene datasets☆57Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python implementation of Milo for differential abundance testing on KNN graph☆85Feb 17, 2025Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆109Jul 13, 2026Updated last week
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆64Jul 13, 2026Updated last week
- ☆18Dec 4, 2025Updated 7 months ago
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 7 months ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated 2 years ago
- Documentation☆18Feb 25, 2026Updated 4 months ago
- Multigrate: multiomic data integration for single-cell genomics☆34Jul 13, 2026Updated last week
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆46May 27, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 8 months ago
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆33Jul 9, 2025Updated last year
- a dataloader to work with large single cell datasets from lamindb☆41May 20, 2026Updated 2 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled cluster…☆38Mar 30, 2026Updated 3 months ago
- ☆23Jan 6, 2026Updated 6 months ago
- Code used to benchmark Xenium☆86Apr 10, 2026Updated 3 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- ☆10Apr 28, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆16Mar 23, 2024Updated 2 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆201Jan 30, 2026Updated 5 months ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Aug 28, 2023Updated 2 years ago
- ☆35Mar 16, 2026Updated 4 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- Easy single cell analysis platform for enrichment☆228Apr 3, 2026Updated 3 months ago
- ☆15Nov 7, 2025Updated 8 months ago
- ☆16Dec 18, 2024Updated last year
- ☆17Jul 12, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆33Aug 20, 2025Updated 11 months ago
- Python package to interactively annotate histological images within a jupyter notebook☆18Oct 20, 2025Updated 9 months ago
- parallel differential expression for single-cell perturbation sequencing☆25Updated this week
- Nextflow implementation of scAutoQC pipeline☆12Jul 9, 2026Updated last week
- A Python package for unsupervised analysis of spatial (prote)omics data.☆17Updated this week
- ☆11May 6, 2021Updated 5 years ago
- Single cell pipelines☆16Jun 14, 2026Updated last month