Weakly supervised learning uncovers phenotypic signatures in single-cell data
☆42Jun 7, 2026Updated 4 months ago
Alternatives and similar repositories for multimil
Users that are interested in multimil are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆24Apr 30, 2025Updated last year
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 4 years ago
- ☆68Sep 13, 2024Updated 2 years ago
- Metric Space Magnitude Computations☆15Jun 30, 2026Updated 3 months ago
- ☆16Sep 1, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Code and documentation for the curation of cellxgene datasets☆59Oct 1, 2026Updated last week
- Python implementation of Milo for differential abundance testing on KNN graph☆87Feb 17, 2025Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Sep 28, 2026Updated last week
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆80Updated this week
- ☆18Dec 4, 2025Updated 10 months ago
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 9 months ago
- Documentation☆20Aug 28, 2026Updated last month
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated 2 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆54May 27, 2026Updated 4 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled cluster…☆38Mar 30, 2026Updated 6 months ago
- ☆22Jan 6, 2026Updated 9 months ago
- Code used to benchmark Xenium☆86Apr 10, 2026Updated 5 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated 2 years ago
- ☆10Apr 28, 2023Updated 3 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆206Jan 30, 2026Updated 8 months ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Aug 28, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆29Jan 3, 2025Updated last year
- ☆35Jul 20, 2026Updated 2 months ago
- Easy single cell analysis platform for enrichment☆236Aug 9, 2026Updated 2 months ago
- Remove unwanted batch effects☆16Sep 29, 2026Updated last week
- ☆17Dec 18, 2024Updated last year
- ☆17Jul 12, 2024Updated 2 years ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆38Aug 15, 2026Updated last month
- Multigrate: multiomic data integration for single-cell genomics☆35Updated this week
- Python package to interactively annotate histological images within a jupyter notebook☆19Oct 20, 2025Updated 11 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- parallel differential expression for single-cell perturbation sequencing☆31Aug 26, 2026Updated last month
- Nextflow implementation of scAutoQC pipeline☆12Sep 30, 2026Updated last week
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated 2 months ago
- a dataloader to work with large single cell datasets from lamindb☆41Aug 27, 2026Updated last month
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆17Updated this week
- ☆11May 6, 2021Updated 5 years ago
- Single cell pipelines☆17Jun 14, 2026Updated 3 months ago