theislab / scTab
☆57Updated 7 months ago
Alternatives and similar repositories for scTab:
Users that are interested in scTab are comparing it to the libraries listed below
- ☆30Updated last week
- Single cell omics biology annotations☆51Updated last month
- Gene group activity utility functions for Scanpy☆71Updated 3 months ago
- Spatial direct messaging detected by bivariate Moran☆26Updated 2 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆23Updated 4 months ago
- ☆46Updated last week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆56Updated this week
- ☆25Updated 3 months ago
- ☆51Updated last week
- Python implementation of Milo for differential abundance testing on KNN graph☆64Updated last month
- ☆24Updated 2 months ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆39Updated this week
- Additional code and analysis from the single-cell integration benchmarking project☆59Updated 2 years ago
- End-to-end analysis of spatial multi-omics data☆65Updated 3 weeks ago
- ☆14Updated 2 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆23Updated 7 months ago
- ☆21Updated 2 years ago
- ☆43Updated last month
- single cell foundation model for Gene network inference and more☆57Updated 3 weeks ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆38Updated this week
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- ☆53Updated last year
- ☆26Updated last year
- ☆45Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆20Updated 2 months ago
- ACTIONet single-cell analysis framework☆38Updated 6 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆18Updated 11 months ago