Difference in Intercellular Communication from scRNA-seq data
☆24Oct 14, 2025Updated 5 months ago
Alternatives and similar repositories for scDiffCom
Users that are interested in scDiffCom are comparing it to the libraries listed below
Sorting:
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated 8 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆76Nov 2, 2025Updated 4 months ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Jul 5, 2023Updated 2 years ago
- ☆20Sep 8, 2023Updated 2 years ago
- ☆17Jul 13, 2024Updated last year
- ☆63Aug 26, 2025Updated 6 months ago
- ☆14Apr 2, 2025Updated 11 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Oct 7, 2024Updated last year
- ☆25Oct 25, 2023Updated 2 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 3 months ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Sep 29, 2024Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆234Aug 7, 2024Updated last year
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Jul 11, 2021Updated 4 years ago
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 4 months ago
- ☆32Jan 3, 2025Updated last year
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- ☆64Sep 13, 2024Updated last year
- ☆11Jun 11, 2023Updated 2 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- Vector representations of gene co-expression in single cell RNAseq.☆36Nov 8, 2025Updated 4 months ago
- ☆25Mar 12, 2026Updated last week
- Multi-modal single cell analysis pipelines☆62Dec 11, 2025Updated 3 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆227Updated this week
- ☆11May 25, 2025Updated 9 months ago
- ☆15Feb 28, 2025Updated last year
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated last month
- A unified interface to spatial transcriptomics deconvolution tools☆45Feb 15, 2026Updated last month
- Analysis and visualization of RNA-Seq results☆30Dec 31, 2025Updated 2 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Mar 15, 2023Updated 3 years ago
- R package for Bioconductor submission☆39Dec 8, 2022Updated 3 years ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 8 months ago
- ☆18Apr 17, 2025Updated 11 months ago
- ☆39Jan 19, 2026Updated 2 months ago
- ☆92Aug 29, 2025Updated 6 months ago
- ☆14Nov 29, 2025Updated 3 months ago
- ☆17Feb 19, 2026Updated last month