jzhoulab / quasildr
Quasilinear data representations for single-cell omics data analysis
☆42Updated last year
Alternatives and similar repositories for quasildr:
Users that are interested in quasildr are comparing it to the libraries listed below
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated this week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 10 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Single cell omics biology annotations☆51Updated last month
- Trajectory inference and differential expression over multiple conditions in scRNA-seq☆24Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- .h5mu files interface for Seurat☆29Updated last year
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆64Updated last month
- ☆46Updated 2 weeks ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆38Updated 3 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- R implementation of GeneTrajectory☆58Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 6 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 11 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆69Updated 2 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 7 months ago
- ☆35Updated last month
- Single-Cell Clustering Assessment Framework☆99Updated last year
- ☆40Updated 4 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆58Updated 2 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆40Updated 2 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated 9 months ago