Quasilinear data representations for single-cell omics data analysis
☆43May 4, 2023Updated 3 years ago
Alternatives and similar repositories for quasildr
Users that are interested in quasildr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆26Dec 25, 2023Updated 2 years ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆34Apr 14, 2023Updated 3 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆67Mar 31, 2026Updated last month
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆115Nov 19, 2025Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Store collections of experimental data based on TileDB☆12Updated this week
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆81Dec 4, 2025Updated 5 months ago
- ☆43Jun 11, 2022Updated 3 years ago
- Inference of switch-like differential expression along single-cell trajectories☆22Oct 24, 2017Updated 8 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆151Dec 5, 2024Updated last year
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆12Oct 23, 2024Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated 2 years ago
- A Bayesian model for compositional single-cell data analysis☆195Jan 13, 2026Updated 3 months ago
- Multi-omic velocity inference☆118Oct 23, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆40Mar 31, 2026Updated last month
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆122Jan 22, 2024Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Apr 13, 2021Updated 5 years ago
- trajectory inference☆109Jan 27, 2025Updated last year
- Tools for assessing clustering robustness☆32Apr 2, 2026Updated last month
- R package for specialised analysis of single cell data☆41Oct 14, 2022Updated 3 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆86Apr 13, 2021Updated 5 years ago
- Non-parametric density inference for single-cell analysis.☆73Apr 10, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆492Apr 23, 2026Updated 2 weeks ago
- Multi-modal single cell analysis pipelines☆62Dec 11, 2025Updated 4 months ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- CellRank: dynamics from multi-view single-cell data☆443Updated this week
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆34Apr 4, 2025Updated last year
- ☆17Apr 9, 2021Updated 5 years ago
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆12Feb 22, 2024Updated 2 years ago
- A novel unsupervised batch removal framework, called iMAP, based on neural networks.☆35Jan 12, 2022Updated 4 years ago
- RNA Velocity generalized through dynamical modeling☆497Feb 25, 2026Updated 2 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- R package: determining cutoff values from bimodal data☆11Mar 17, 2024Updated 2 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆432Updated this week
- R package for transfer learning of single-cell RNA-seq denoising☆31Jun 14, 2022Updated 3 years ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 2 years ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago
- Useful bash one-liners for bioinformatics.☆10Jun 26, 2017Updated 8 years ago