Alternatives and similar repositories for PySNAIL

Users that are interested in PySNAIL are comparing it to the libraries listed below

• pachterlab / qcbc
  ☆20Updated 5 months ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆20Updated 6 months ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆18Updated 3 months ago
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆19Updated 3 years ago
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆17Updated 6 months ago
• SimoneTiberi / BANDITS
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆18Updated 3 weeks ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• jacobhepkema / scover
  scover
  ☆24Updated last year
• HTGenomeAnalysisUnit / nf-pipeline-regenie
  GWAS and rare variants tests at high speed using regenie
  ☆15Updated this week
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 3 years ago
• zd105 / AllEnricher
  A comprehensive gene set function enrichment tool for multiple species.
  ☆14Updated 5 years ago
• slowkow / cellguide
  🧭 Navigate single-cell RNA-seq datasets in your web browser.
  ☆29Updated 2 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated last year
• MarioniLab / sarlacc
  The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…
  ☆15Updated 6 years ago
• genemine / iread
  iread
  ☆25Updated 4 years ago
• XPRESSyourself / XPRESSpipe
  An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
  ☆13Updated last year
• AlexsLemonade / scpca-nf
  scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
  ☆15Updated this week
• churchill-lab / scBASE
  A set of tools for accurate quantitation of single-cell allele-specific expression
  ☆13Updated 2 years ago
• finkelsteinlab / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆10Updated 7 years ago
• gagneurlab / FRASER-analysis
  Accompanying analysis code for the FRASER manuscript
  ☆26Updated 5 years ago
• NourMarzouka / multiclassPairs
  Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.
  ☆13Updated 2 years ago
• JamesJoly / DGSEA
  An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…
  ☆14Updated 2 years ago
• caleblareau / mitoblacklist
  Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
  ☆22Updated 3 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 7 years ago
• salbrec / seqQscorer
  ☆22Updated last month
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆29Updated 6 years ago
• beroukhim-lab / BISCUT-py3
  ☆12Updated last year