Smooth-quantile Normalization Adaptation for Inference of co-expression Links
☆16May 16, 2023Updated 2 years ago
Alternatives and similar repositories for PySNAIL
Users that are interested in PySNAIL are comparing it to the libraries listed below
Sorting:
- ☆11Oct 20, 2024Updated last year
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 2 years ago
- Fast algorithms for GLM-PCA.☆14Mar 12, 2025Updated 11 months ago
- PHOENIX: a tool to infer biologically informed NeuralODEs describing genome-wide regulatory dynamics☆19May 8, 2024Updated last year
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- ☆60Apr 5, 2024Updated last year
- Multi-modal single cell analysis pipelines☆62Dec 11, 2025Updated 2 months ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Oct 20, 2025Updated 4 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 3 months ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 3 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- R package: determining cutoff values from bimodal data☆11Mar 17, 2024Updated last year
- A shiny app for metacell analysis☆10Updated this week
- Fit phenomenological sigmoid and impulse curves with priors to improve interpretability☆10May 29, 2024Updated last year
- ☆12Sep 14, 2025Updated 5 months ago
- ☆10Mar 25, 2025Updated 11 months ago
- CellRank 2's reproducibility repository.☆15Sep 4, 2024Updated last year
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated 11 months ago
- ☆13Jan 23, 2025Updated last year
- ☆10Apr 30, 2019Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆26Apr 26, 2022Updated 3 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆12Dec 27, 2023Updated 2 years ago
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated last year
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"☆11Jul 13, 2018Updated 7 years ago
- HiDeF (Hierarchical community Decoding Framework)☆15Jan 30, 2024Updated 2 years ago
- Manage Files Across Sessions☆13Oct 30, 2025Updated 4 months ago
- An statistical approach leveraging segments of distinct ancestries within individuals to estimate similarity in underlying causal effect …☆13Sep 27, 2024Updated last year
- Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆14Jul 10, 2024Updated last year
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Sep 3, 2025Updated 5 months ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 4 months ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 10 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated last year