kuijjerlab / PySNAILLinks
Smooth-quantile Normalization Adaptation for Inference of co-expression Links
☆16Updated 2 years ago
Alternatives and similar repositories for PySNAIL
Users that are interested in PySNAIL are comparing it to the libraries listed below
Sorting:
- Comprehensive Human Expressed SequenceS☆18Updated 2 months ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆16Updated 3 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 4 months ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated 2 years ago
- 🐶 hlabud: HLA genotype analysis in R☆17Updated 5 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- GWAS and rare variants tests at high speed using regenie☆15Updated 8 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆14Updated 6 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- ☆20Updated 3 months ago
- scover☆23Updated last year
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆18Updated last year
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Updated 5 years ago
- omics data analysis using clusterProfiler ;)☆14Updated last year
- ☆12Updated 4 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 4 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆12Updated last year
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- CircRNA testing and ploting R package☆10Updated 4 years ago