MangiolaLaboratory / sccomp
Mixed-effect model to test differences in cell type proportions from single-cell data
☆97Updated this week
Alternatives and similar repositories for sccomp:
Users that are interested in sccomp are comparing it to the libraries listed below
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated last month
- Easily install and load packages from the tidyomcis ecosystem☆63Updated 11 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- An R interface to enrichR☆84Updated last week
- Framework for sensitive DE testing (using neighbourhoods)☆63Updated 6 months ago
- Simplify functional enrichment results☆113Updated 4 months ago
- ☆119Updated 2 weeks ago
- Latent Embedding Multivariate Regression☆85Updated 2 months ago
- ☆57Updated 8 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆116Updated 5 months ago
- ☆60Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- Easy single cell analysis platform for enrichment☆158Updated this week
- ☆53Updated 4 years ago
- Tools for single-cell data processing☆122Updated 8 months ago
- An R interface to the MEME Suite☆47Updated 3 months ago
- Identify and correct invalid gene symbols☆57Updated 2 months ago
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆54Updated last year
- R package for semi-supervised single-cell data integration☆79Updated 11 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Clone of the Bioconductor repository for the DropletUtils package.☆56Updated last month
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆118Updated 4 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆100Updated 7 months ago
- A tool for removing doublets from single-cell RNA-seq data☆71Updated 4 years ago
- The package wrapping the book, for deployment via the Bioconductor build system.☆84Updated 2 months ago
- Normalize CITEseq Data☆65Updated 7 months ago
- R client for the OmniPath web service☆124Updated last month
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆73Updated 2 months ago
- From geospatial to spatial -omics☆84Updated last week
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated 11 months ago