Alternatives and similar repositories for sccomp

Users that are interested in sccomp are comparing it to the libraries listed below

• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆93Updated last year
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆125Updated 9 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆94Updated last year
• tidyomics / tidyomics
  Easily install and load packages from the tidyomics ecosystem
  ☆75Updated 3 months ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆123Updated last week
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆98Updated last year
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆76Updated 2 months ago
• scverse / anndataR
  AnnData interoperability in R
  ☆149Updated this week
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆138Updated 6 months ago
• niaid / dsb
  Normalize CITEseq Data
  ☆67Updated 3 months ago
• andygxzeng / BoneMarrowMap
  A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …
  ☆83Updated 8 months ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆66Updated 4 years ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• rpolicastro / scProportionTest
  ☆75Updated 2 years ago
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆59Updated last year
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆52Updated 2 years ago
• pachterlab / voyager
  From geospatial to spatial -omics
  ☆100Updated this week
• saezlab / OmnipathR
  R client for the OmniPath web service
  ☆152Updated 2 weeks ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆209Updated last month
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆84Updated 2 years ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆144Updated last year
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆99Updated last year
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆39Updated 3 years ago
• iaconogi / bigSCale2
  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
  ☆107Updated 2 years ago
• theislab / destiny
  R package for single cell and other data analysis using diffusion maps
  ☆92Updated 3 months ago
• rezakj / iCellR
  iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …
  ☆128Updated 2 months ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆99Updated 2 years ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆80Updated 2 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆114Updated 3 years ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆95Updated last week