Alternatives and similar repositories for napari-sparrow

Users that are interested in napari-sparrow are comparing it to the libraries listed below

• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆24Updated last year
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆44Updated 3 weeks ago
• scverse / spatialdata-io
  ☆73Updated last week
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆29Updated last year
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆61Updated 2 months ago
• Feanor007 / MESA
  A python package for Multiomics and Ecological Spatial Analysis (MESA)
  ☆21Updated 6 months ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆21Updated 2 weeks ago
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆41Updated last week
• wanglab-broad / CAST
  CAST package
  ☆40Updated 11 months ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated last year
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆84Updated 3 months ago
• nf-core / spatialxe
  ☆22Updated this week
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆65Updated 3 months ago
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆35Updated 3 weeks ago
• scverse / spatialdata-notebooks
  ☆60Updated last week
• estellad / SpatialExperimentIO
  Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.
  ☆16Updated last month
• quadbio / cell-annotator
  Automatically annotate cell types, consistently across samples.
  ☆16Updated 2 months ago
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆25Updated this week
• nolanlab / SpatialScore
  R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…
  ☆16Updated 4 years ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆42Updated 5 months ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆99Updated 3 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆39Updated 7 months ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆33Updated last year
• theislab / interactive_plotting
  ☆22Updated 5 years ago
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆29Updated 11 months ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆31Updated 11 months ago
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆31Updated 3 months ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆15Updated 10 months ago
• bhuvad / SpaNorm
  R package for normalisation of spatial transcriptomics data
  ☆14Updated 4 months ago
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago