labsyspharm / CRC_atlas_2022
☆14Updated last week
Alternatives and similar repositories for CRC_atlas_2022:
Users that are interested in CRC_atlas_2022 are comparing it to the libraries listed below
- The Single-Cell Pathology Landscape of Breast Cancer☆26Updated 5 years ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆21Updated last week
- ☆34Updated last year
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆25Updated last month
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆34Updated last month
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Updated 3 months ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆34Updated 2 years ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆29Updated last week
- ☆25Updated 5 years ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆14Updated last month
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- ☆12Updated 7 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆63Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆43Updated 9 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆53Updated last year
- A package for the analysis of Imaging Mass Cytometry data☆13Updated last month
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆18Updated 2 months ago
- Pan-cancer quantitative histopathology analysis using deep learning☆10Updated 3 years ago
- ☆30Updated 3 months ago
- ☆40Updated 2 years ago
- ☆12Updated 2 weeks ago
- Interoperability between SpatialData and the Xenium Explorer☆21Updated 8 months ago
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆23Updated last year
- ☆21Updated 2 years ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆11Updated 2 months ago
- Interactive applications of stlearn☆16Updated last year
- ☆9Updated last month
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆18Updated 4 months ago
- ☆26Updated 6 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆12Updated 11 months ago