labsyspharm / CRC_atlas_2022
☆15Updated last month
Alternatives and similar repositories for CRC_atlas_2022:
Users that are interested in CRC_atlas_2022 are comparing it to the libraries listed below
- The Single-Cell Pathology Landscape of Breast Cancer☆26Updated 5 years ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆14Updated 2 months ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆21Updated 3 weeks ago
- ☆35Updated last year
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆25Updated last month
- ☆22Updated 2 years ago
- A public MuSpAn page for community discussions and issue reporting.☆11Updated last week
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆34Updated 3 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- ☆31Updated 3 months ago
- Tool to create images and configuration files for Minerva-Story☆16Updated last month
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆24Updated last year
- Pan-cancer quantitative histopathology analysis using deep learning☆11Updated 3 years ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆29Updated last month
- ☆12Updated 8 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆11Updated 2 months ago
- ☆25Updated 5 years ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆41Updated last month
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆18Updated last week
- Interoperability between SpatialData and the Xenium Explorer☆21Updated 9 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆42Updated 9 months ago
- Conditional Autoencoders for Multiplexed Pixel Analysis☆15Updated 2 years ago
- Multimodality Fusion Subtyping (Nature Communications)☆15Updated 2 weeks ago
- End-to-end model for cell segmentation and classification☆11Updated 3 months ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Updated 4 months ago
- ☆24Updated last year
- ☆40Updated 3 years ago
- Interactive applications of stlearn☆15Updated 2 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆41Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 11 months ago