labsyspharm / CRC_atlas_2022Links
☆16Updated 5 months ago
Alternatives and similar repositories for CRC_atlas_2022
Users that are interested in CRC_atlas_2022 are comparing it to the libraries listed below
Sorting:
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆25Updated 6 months ago
- ☆39Updated last year
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆24Updated 5 months ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆43Updated 4 months ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆12Updated 2 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆29Updated 2 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- ☆35Updated last week
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆20Updated 2 weeks ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆31Updated 5 months ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆15Updated 4 years ago
- A public MuSpAn page for community discussions and issue reporting.☆13Updated last week
- ☆11Updated 8 months ago
- ☆26Updated 5 years ago
- ☆13Updated last month
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆35Updated 3 years ago
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆52Updated 5 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆37Updated last year
- ☆69Updated 2 years ago
- ☆32Updated 9 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆14Updated 2 months ago
- Interactive applications of stlearn☆15Updated 2 years ago
- ☆22Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆40Updated 7 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆55Updated 3 months ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆11Updated this week