A novel machine learning pipeline to analyse spatial transcriptomics data
☆262Oct 12, 2026Updated 2 weeks ago
Alternatives and similar repositories for stLearn
Users that are interested in stLearn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆465Oct 19, 2026Updated last week
- Spatial Transcriptomics Capture Location Deconvolution☆216Oct 20, 2025Updated last year
- Spatial alignment of single cell transcriptomic data.☆375Jul 1, 2025Updated last year
- Spatial Single Cell Analysis in Python☆612Updated this week
- ☆34Feb 25, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆490Jan 22, 2026Updated 9 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆191Jan 8, 2026Updated 9 months ago
- Spatial omics analysis toolbox☆394Updated this week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆116Oct 16, 2026Updated last week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆153Feb 20, 2025Updated last year
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆104Jul 4, 2026Updated 3 months ago
- Spatiotemporal modeling of spatial transcriptomics☆346Feb 25, 2026Updated 8 months ago
- BANKSY: spatial clustering☆170Sep 29, 2026Updated last month
- A toolkit of spatial transcriptomic analysis.☆296Jul 17, 2026Updated 3 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆264Feb 9, 2026Updated 8 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆172May 6, 2025Updated last year
- Spatially resolved transcriptomic analysis☆68Nov 17, 2022Updated 3 years ago
- ☆150Jun 25, 2026Updated 4 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆324Oct 9, 2026Updated 2 weeks ago
- ☆167Mar 20, 2026Updated 7 months ago
- Test genes for Spatial Variation☆193May 7, 2024Updated 2 years ago
- A tool for semi-automatic cell type classification☆516May 22, 2026Updated 5 months ago
- CellRank: dynamics from multi-view single-cell data☆459Oct 14, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Identify spatial domain☆92May 29, 2025Updated last year
- Interactive applications of stlearn☆17May 1, 2023Updated 3 years ago
- Multiview Intercellular SpaTial modeling framework☆74Jan 15, 2026Updated 9 months ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆219Oct 2, 2026Updated 3 weeks ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆57Aug 11, 2025Updated last year
- ☆136Aug 23, 2026Updated 2 months ago
- Spatial Single-Cell Analysis Toolkit☆116Updated this week
- ☆165Mar 19, 2024Updated 2 years ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆482Apr 11, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- LIANA: a LIgand-receptor ANalysis frAmework☆253Aug 7, 2024Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆89Mar 5, 2022Updated 4 years ago
- ☆33Aug 2, 2023Updated 3 years ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆491Jun 6, 2025Updated last year
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆270Jul 8, 2026Updated 3 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆203Updated this week
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆161Aug 3, 2025Updated last year