☆19Mar 8, 2023Updated 3 years ago
Alternatives and similar repositories for ISSAAC-seq
Users that are interested in ISSAAC-seq are comparing it to the libraries listed below
Sorting:
- ☆11Oct 4, 2021Updated 4 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- Bead-based single-cell atac processing☆33Nov 13, 2021Updated 4 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated last year
- ChIA-PET Utilities☆13Dec 19, 2021Updated 4 years ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 4 years ago
- Tools for correcting single cell barcodes for various scATAC-seq techniques and creating fragment files and spltting BAM files per cluste…☆29Feb 16, 2026Updated last month
- Advanced steps of the OSCA book☆14Nov 19, 2025Updated 4 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Jan 4, 2022Updated 4 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆33Nov 28, 2025Updated 3 months ago
- Camiel's scATAC-seq analysis pipeline☆13Apr 15, 2024Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆145Apr 5, 2024Updated last year
- ☆20Nov 15, 2020Updated 5 years ago
- ☆11May 10, 2025Updated 10 months ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- Cell2location paper - Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics☆15Nov 26, 2022Updated 3 years ago
- ☆13Feb 12, 2026Updated last month
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Information-based dimensionality reduction☆29Dec 14, 2024Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- ☆13Jan 23, 2025Updated last year
- ☆10May 31, 2022Updated 3 years ago
- ☆34Apr 8, 2023Updated 2 years ago
- ☆19Mar 11, 2024Updated 2 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆29Oct 4, 2021Updated 4 years ago
- ☆12Mar 22, 2023Updated 3 years ago
- ☆10Mar 11, 2025Updated last year
- Reproducibility Repo for mvTCR paper☆13Apr 2, 2024Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆26Sep 23, 2025Updated 5 months ago
- ☆11Jun 11, 2023Updated 2 years ago
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year
- ☆31Apr 12, 2023Updated 2 years ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Aug 28, 2023Updated 2 years ago
- ☆60Apr 5, 2024Updated last year
- Single cell Nanopore sequencing data for Genotype and Phenotype☆57May 15, 2025Updated 10 months ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- ☆47Apr 18, 2020Updated 5 years ago