Alternatives and similar repositories for cellhashR

Users that are interested in cellhashR are comparing it to the libraries listed below

• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆41Updated 4 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆21Updated 3 years ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 6 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated last year
• cbib / Seurat-Integrate
  R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…
  ☆31Updated 5 months ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆52Updated 2 years ago
• jon-xu / scSplit
  Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…
  ☆41Updated 3 years ago
• shenorrLabTRDF / cellAlign
  ☆43Updated 5 years ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated last week
• jyyulab / scMINER
  Single-cell Mutual Information-based Network Engineering Ranger
  ☆22Updated 5 months ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆32Updated last year
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆40Updated 3 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆46Updated 3 years ago
• phipsonlab / speckle
  R package for analysing single cell data
  ☆59Updated 3 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆39Updated 3 years ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆47Updated 6 months ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• SCA-IRCM / SingleCellSignalR
  R package for Bioconductor submission
  ☆38Updated 3 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆67Updated 2 months ago
• UPSUTER / GEMLI
  ☆33Updated last year
• lhe17 / nebula
  ☆48Updated 2 months ago
• alserglab / mascarade
  Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
  ☆45Updated last week
• GabrielHoffman / dreamlet
  Perform differential expression analysis on multi-sample single cell datasets using linear mixed models
  ☆29Updated last week
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆47Updated 2 years ago
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 7 months ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated last year
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆61Updated 3 years ago
• colomemaria / epiAneufinder
  R package to detect breakpoints and assign somies to scATAC-seq data
  ☆42Updated 2 months ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated 2 years ago