Alternatives and similar repositories for single-cell-papers-trends

Users that are interested in single-cell-papers-trends are comparing it to the libraries listed below

• stephenslab / gbcd
  R package for generalized binary covariance decomposition.
  ☆11Updated 4 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 8 months ago
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆33Updated 7 months ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated last year
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆16Updated 11 months ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆34Updated 2 months ago
• satijalab / Mixscale
  ☆21Updated last month
• jig4003 / Ragas
  R tools for analysis and visualization of single-cell subclustering data
  ☆17Updated 2 months ago
• ludvigla / STUtility_web_site
  ☆15Updated 3 years ago
• mardzix / bcd_nano_CUTnTag
  ☆12Updated 2 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆28Updated 3 years ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 7 months ago
• cbib / Seurat-Integrate
  R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…
  ☆31Updated 2 months ago
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆26Updated last year
• liuqivandy / SpaGene
  ☆24Updated 2 years ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆19Updated 6 months ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• seasoncloud / Clonalscope
  Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…
  ☆24Updated last month
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆22Updated last month
• xichensf / magical
  R and MATLAB scripts for MAGICAL
  ☆11Updated last year
• tkamath1 / Kamathetal2022
  Code to reproduce analyses and figures for Kamath et al., 2022
  ☆12Updated 3 years ago
• ZxZhou4150 / Redeconve
  Deconvolution of spatial transcriptomics at single-cell resolution
  ☆20Updated last year
• LaughneyLab / ContactTracing_tutorial
  ☆17Updated last year
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• Teichlab / sctk
  ☆43Updated 2 weeks ago
• jiang-junyao / IReNA
  R package IReNA
  ☆28Updated last year
• theislab / cross_system_integration
  ☆13Updated 2 months ago
• XZouProjects / scCODE
  The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data
  ☆14Updated 2 years ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆25Updated last year