Alternatives and similar repositories for single-cell-papers-trends

Users that are interested in single-cell-papers-trends are comparing it to the libraries listed below

• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆32Updated 6 months ago
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆26Updated 11 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 7 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 7 months ago
• jig4003 / Ragas
  R tools for analysis and visualization of single-cell subclustering data
  ☆17Updated last month
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• cbib / Seurat-Integrate
  R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…
  ☆31Updated last month
• xichensf / magical
  R and MATLAB scripts for MAGICAL
  ☆11Updated last year
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆34Updated last month
• liuqivandy / SpaGene
  ☆24Updated 2 years ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated last year
• satijalab / Mixscale
  ☆20Updated 3 weeks ago
• AllenInstitute / mouse_aging_scRNAseq
  analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain
  ☆19Updated last year
• stephenslab / gbcd
  R package for generalized binary covariance decomposition.
  ☆11Updated 3 months ago
• LaughneyLab / ContactTracing_tutorial
  ☆17Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆28Updated 3 years ago
• mardzix / bcd_nano_CUTnTag
  ☆12Updated last year
• ZxZhou4150 / Redeconve
  Deconvolution of spatial transcriptomics at single-cell resolution
  ☆20Updated last year
• Jonyyqn / scMalignantFinder
  scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…
  ☆15Updated 3 weeks ago
• ventolab / Human-Gonadal-Development-Atlas_HGDA
  ☆21Updated 10 months ago
• Caochris / SCOTIA
  ☆21Updated 3 months ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated this week
• wuaipinglab / scImmuCC
  Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.
  ☆10Updated last year
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆16Updated 11 months ago
• secrierlab / SpottedPy
  Hotspot cluster distance analysis in spatial transcriptomic data
  ☆33Updated 8 months ago
• ludvigla / STUtility_web_site
  ☆15Updated 3 years ago
• Coolgenome / PDAC
  ☆21Updated 8 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆21Updated 5 years ago