Alternatives and similar repositories for contrastiveVI

Users that are interested in contrastiveVI are comparing it to the libraries listed below

• bm2-lab / scMVP
  ☆34Updated 8 months ago
• PYangLab / Matilda
  Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…
  ☆22Updated 6 months ago
• QuKunLab / MultiomeBenchmarking
  ☆50Updated 9 months ago
• dpeerlab / ENVI
  ☆52Updated 2 months ago
• theislab / scTab
  ☆61Updated last year
• nitzanlab / biolord
  ☆89Updated last year
• mlbio-epfl / systema
  ☆46Updated 5 months ago
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆21Updated 4 months ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆33Updated 2 years ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 10 months ago
• YangLabHKUST / STitch3D
  Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
  ☆69Updated 2 years ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆40Updated last year
• Genentech / pascient
  ☆17Updated 7 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆101Updated last month
• zcang / SpaOTsc
  ☆45Updated 5 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆73Updated 2 years ago
• Teichlab / celcomen
  ☆18Updated 2 weeks ago
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆47Updated 4 years ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated 2 years ago
• theislab / scArches-reproducibility
  Reproducing result from the paper
  ☆34Updated 4 years ago
• JiangBioLab / DeepCCI
  ☆21Updated 3 years ago
• bowang-lab / DeepVelo
  ☆46Updated last year
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆44Updated last year
• KlugerLab / SIMVI
  ☆15Updated 5 months ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆27Updated last month
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• nceglia / genevector
  Vector representations of gene co-expression in single cell RNAseq.
  ☆36Updated last month
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆34Updated 3 weeks ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆36Updated 2 years ago