☆60Apr 5, 2024Updated last year
Alternatives and similar repositories for contrastiveVI
Users that are interested in contrastiveVI are comparing it to the libraries listed below
Sorting:
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- ☆16Sep 1, 2023Updated 2 years ago
- ☆92Aug 12, 2024Updated last year
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16May 16, 2023Updated 2 years ago
- ☆13Feb 12, 2026Updated 3 weeks ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 10 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 6 months ago
- ☆29Sep 4, 2023Updated 2 years ago
- Latent Embedding Multivariate Regression☆100Feb 18, 2026Updated 2 weeks ago
- Fast algorithms for GLM-PCA.☆14Mar 12, 2025Updated 11 months ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 3 years ago
- Multi-modal single cell analysis pipelines☆62Dec 11, 2025Updated 2 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- ☆19Mar 8, 2023Updated 3 years ago
- Dependency-aware deep generative models for multitasking analysis of spatial genomics data☆43Jul 10, 2024Updated last year
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- ☆41Jun 24, 2025Updated 8 months ago
- ☆17Updated this week
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆19Mar 31, 2024Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆189Jan 30, 2026Updated last month
- Reference mapping for single-cell genomics☆400Dec 2, 2025Updated 3 months ago
- A shiny app for metacell analysis☆10Feb 26, 2026Updated last week
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Jul 29, 2023Updated 2 years ago
- ☆13Jan 23, 2025Updated last year
- An efficient tool for large-scale correlation network analysis☆14Dec 27, 2024Updated last year
- monae: multi-modal single-cell integration and imputation☆13Sep 13, 2024Updated last year
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Apr 2, 2025Updated 11 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- SIMBA: SIngle-cell eMBedding Along with features☆20Jan 6, 2026Updated 2 months ago
- Code and example of the D-SPIN framework☆24Jan 12, 2026Updated last month
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Nov 17, 2024Updated last year
- ☆43Jun 11, 2022Updated 3 years ago
- ☆52Oct 9, 2025Updated 5 months ago
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated 7 months ago
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆12Nov 5, 2024Updated last year
- Camiel's scATAC-seq analysis pipeline☆13Apr 15, 2024Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆246Jan 16, 2026Updated last month