dpeerlab / spectraLinks
Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms
☆185Updated last year
Alternatives and similar repositories for spectra
Users that are interested in spectra are comparing it to the libraries listed below
Sorting:
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆174Updated 9 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- Multi-omic velocity inference☆113Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆77Updated 10 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆178Updated 2 weeks ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆79Updated 2 weeks ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆146Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆116Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆112Updated 3 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆139Updated 2 years ago
- Test genes for Spatial Variation☆179Updated last year
- A Bayesian model for compositional single-cell data analysis☆184Updated 2 years ago
- ☆85Updated 2 weeks ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆147Updated 3 weeks ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆178Updated 4 months ago
- Multiome GRN inference.☆131Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆150Updated last year
- Conversion between scRNA-seq objects☆195Updated last week
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆151Updated 5 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated last month
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆240Updated 11 months ago
- ☆129Updated last year
- Python package to perform enrichment analysis from omics data.☆245Updated 2 weeks ago
- Join subcellular Visium HD bins into cells☆131Updated 2 months ago
- ☆131Updated 2 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆119Updated 2 months ago
- Spatial transcriptomics of heart tissue☆106Updated 2 years ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 4 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆78Updated 2 weeks ago