powellgenomicslab / DropletQC
Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
☆36Updated 3 years ago
Alternatives and similar repositories for DropletQC:
Users that are interested in DropletQC are comparing it to the libraries listed below
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆54Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 9 months ago
- ☆40Updated 4 years ago
- An r package that works as a wrapper to homologene☆44Updated last year
- A database of useful gene signatures for single-cell analysis☆21Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 3 weeks ago
- Cell type pipes for R☆51Updated last year
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- ☆29Updated 2 years ago
- ☆46Updated 5 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆48Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Toolkit for Single-Cell Velocity☆55Updated 3 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆21Updated 4 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- R package for analysing single cell data☆53Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 10 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆55Updated 5 months ago