natsuhiko / PHMLinks
Pairwise Hierarchical Model
☆20Updated 3 years ago
Alternatives and similar repositories for PHM
Users that are interested in PHM are comparing it to the libraries listed below
Sorting:
- Bead-based single-cell atac processing☆33Updated 4 years ago
- scover☆24Updated 2 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆20Updated 2 years ago
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- Collection of R functions used in the Hochwagen Lab☆12Updated 5 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- ☆20Updated 5 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- Trans-association between HLA and TCR-CDR3☆19Updated 2 years ago
- Human brain, >200,000 nuclei☆23Updated 4 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated last year
- Single-cell RNA Processing Software☆11Updated 6 months ago
- ☆14Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- ☆18Updated 2 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Updated 3 years ago
- ☆23Updated last year
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- ☆12Updated 6 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- Code for implementing Mendelian randomization investigations☆20Updated 10 years ago
- ☆25Updated 3 years ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Updated last year
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago