Tutorials for learning scverse
☆20Apr 20, 2026Updated last week
Alternatives and similar repositories for scverse-tutorials
Users that are interested in scverse-tutorials are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 3 years ago
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆21Jun 12, 2023Updated 2 years ago
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 4 months ago
- Automatically annotate cell types, consistently across samples.☆20Updated this week
- ☆16Oct 4, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Build contrasts for models defined with formulaic☆12Updated this week
- ☆35Updated this week
- Scripts to help get fastqs☆19Feb 24, 2026Updated 2 months ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆54Updated this week
- Shadow objects for AnnData and MuData (experimental)☆12Feb 28, 2025Updated last year
- ☆15Apr 7, 2026Updated 3 weeks ago
- Differential spatial enrichment across conditions☆27Oct 1, 2025Updated 6 months ago
- A Bayesian model for compositional single-cell data analysis☆196Jan 13, 2026Updated 3 months ago
- ☆10Dec 4, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Aug 2, 2020Updated 5 years ago
- ☆92Updated this week
- Invariant Representation learning☆20Jun 26, 2024Updated last year
- LIANA+: an all-in-one framework for cell-cell communication☆283Jan 24, 2026Updated 3 months ago
- Tools for the analysis of heterogeneous tissues☆14Aug 24, 2022Updated 3 years ago
- The Singularity Community Catalog of Singularity* recipe files.☆11Oct 27, 2025Updated 6 months ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆14Oct 17, 2024Updated last year
- Fast, modular and reproducible generation of publication quality scientific figures and movies with only a few lines of code.☆17Apr 9, 2025Updated last year
- ☆31Sep 15, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- ☆12Feb 27, 2019Updated 7 years ago
- single-cell decorrelated module networks☆31Aug 24, 2024Updated last year
- A computational framework for bulk RNA-seq deconvolution☆11Dec 3, 2024Updated last year
- ☆42Jan 12, 2026Updated 3 months ago
- NGS perl modules☆10Updated this week
- Read fcs files.☆12Nov 13, 2025Updated 5 months ago
- R for Data Science (2e) in Simplified Chinese☆23Mar 15, 2026Updated last month
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Apr 22, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Convert AI Skills (Claude Skills format) to MCP server resources - Part of BioContextAI☆24Feb 27, 2026Updated 2 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 5 months ago
- A python port of the R package SCTransform:☆21Jul 10, 2021Updated 4 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Apr 28, 2025Updated last year
- ☆37Sep 20, 2022Updated 3 years ago
- Access public biological ontologies.☆15Aug 7, 2024Updated last year
- Visualizing SingleCell data Using GGplot2☆37Sep 28, 2024Updated last year