Tutorials for learning scverse
☆22Jul 14, 2026Updated last week
Alternatives and similar repositories for scverse-tutorials
Users that are interested in scverse-tutorials are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 4 years ago
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 7 months ago
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆21Jun 12, 2023Updated 3 years ago
- Automatically annotate cell types, consistently across samples.☆25Jul 13, 2026Updated last week
- Build contrasts for models defined with formulaic☆13Jul 13, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆35Updated this week
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- ☆16Apr 7, 2026Updated 3 months ago
- ☆17Oct 4, 2024Updated last year
- High-Performance Sparse Matrix Library☆19Nov 23, 2025Updated 7 months ago
- Fast array utilities☆15Updated this week
- A Bayesian model for compositional single-cell data analysis☆199Jan 13, 2026Updated 6 months ago
- ☆12Aug 2, 2020Updated 5 years ago
- ☆10Dec 4, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts to help get fastqs☆19May 13, 2026Updated 2 months ago
- ☆100Jul 2, 2026Updated 2 weeks ago
- LIANA+: an all-in-one framework for cell-cell communication☆305Updated this week
- Tools for the analysis of heterogeneous tissues☆15Aug 24, 2022Updated 3 years ago
- Invariant Representation learning☆20Jun 26, 2024Updated 2 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆20May 14, 2020Updated 6 years ago
- Registry for scverse ecosystem packages☆37Updated this week
- ☆12Feb 27, 2019Updated 7 years ago
- The Singularity Community Catalog of Singularity* recipe files.☆11Oct 27, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆14Oct 17, 2024Updated last year
- Fast, modular and reproducible generation of publication quality scientific figures and movies with only a few lines of code.☆17Apr 9, 2025Updated last year
- Configure Vitessce using existing Scverse plotting APIs☆25Updated this week
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year
- A computational framework for bulk RNA-seq deconvolution☆11Dec 3, 2024Updated last year
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Jun 12, 2026Updated last month
- A python port of the R package SCTransform:☆21Jul 10, 2021Updated 5 years ago
- NGS perl modules☆10Jul 13, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Differential spatial enrichment across conditions☆28Updated this week
- ☆43Jan 12, 2026Updated 6 months ago
- Read fcs files.☆12Nov 13, 2025Updated 8 months ago
- Visualizing SingleCell data Using GGplot2☆37Sep 28, 2024Updated last year
- Unified access to several second-generation deconvolution methods☆105Jul 6, 2026Updated 2 weeks ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 8 months ago