scverse / scverse-tutorialsLinks
Tutorials for learning scverse
☆18Updated last week
Alternatives and similar repositories for scverse-tutorials
Users that are interested in scverse-tutorials are comparing it to the libraries listed below
Sorting:
- ☆28Updated 3 months ago
- Pan-Cancer Single Cell Classifier☆81Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- Multi-modal single cell analysis pipelines☆61Updated last week
- ☆44Updated last month
- Unified access to several second-generation deconvolution methods☆88Updated last week
- Multiview Intercellular SpaTial modeling framework☆71Updated 6 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated last week
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated last week
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- .h5mu files interface for Seurat☆32Updated 2 years ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆56Updated 2 weeks ago
- Non-parametric density inference for single-cell analysis.☆74Updated 7 months ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 6 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 3 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- Material for the "Advanced topics in single-cell analysis" course (2022 edition)☆17Updated 3 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 2 weeks ago
- Visualizing SingleCell data Using GGplot2☆35Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆52Updated 3 weeks ago
- ☆48Updated this week
- Gene group activity utility functions for Scanpy☆99Updated last year
- ☆48Updated last month
- A single-cell RNA-seq pipeline☆25Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month