scverse / scverse-tutorialsLinks
Tutorials for learning scverse
☆16Updated this week
Alternatives and similar repositories for scverse-tutorials
Users that are interested in scverse-tutorials are comparing it to the libraries listed below
Sorting:
- ☆23Updated this week
- ☆39Updated 9 months ago
- Pan-Cancer Single Cell Classifier☆71Updated last year
- Multiview Intercellular SpaTial modeling framework☆59Updated 3 weeks ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆36Updated 10 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆32Updated 2 weeks ago
- ☆56Updated last year
- R package for pathway analysis in scRNA-seq data☆73Updated 10 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆82Updated last month
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆54Updated last month
- .h5mu files interface for Seurat☆32Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- R package to detect breakpoints and assign somies to scATAC-seq data☆39Updated 2 weeks ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆61Updated 7 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆76Updated 3 years ago
- ☆41Updated last week
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last month
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 5 months ago
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆19Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆32Updated last month
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆74Updated 2 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆43Updated 2 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- The scripts used for analyzing JAX mouse dataset☆25Updated 8 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated last month
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago