earmingol / cell2cellLinks
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
☆67Updated 2 weeks ago
Alternatives and similar repositories for cell2cell
Users that are interested in cell2cell are comparing it to the libraries listed below
Sorting:
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 9 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 7 months ago
- Single cell omics biology annotations☆50Updated 6 months ago
- R implementation of GeneTrajectory☆65Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated last month
- Single-Cell Clustering Assessment Framework☆106Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆77Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated 2 weeks ago
- Metacells - Single-cell RNA Sequencing Analysis☆115Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 4 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆79Updated 9 months ago
- Multi-resolution Variational Inference☆22Updated this week
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 3 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- Non-parametric density inference for single-cell analysis.☆72Updated 5 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆78Updated 6 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆56Updated 2 years ago
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- An R package for handling and analysing imaging mass cytometry data☆28Updated 3 weeks ago
- ☆59Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 5 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆115Updated last year
- Unified access to several second-generation deconvolution methods☆87Updated last week
- Predict RNA velocity through deep learning☆70Updated last year
- ☆59Updated 4 months ago