User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
☆80Sep 4, 2026Updated 2 weeks ago
Alternatives and similar repositories for cell2cell
Users that are interested in cell2cell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Difference in Intercellular Communication from scRNA-seq data☆26Oct 14, 2025Updated 11 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆315Updated this week
- LIANA: a LIgand-receptor ANalysis frAmework☆249Aug 7, 2024Updated 2 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆155Jan 20, 2023Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Coarse-graining of large single-cell RNA-seq data into metacells☆110Apr 16, 2026Updated 5 months ago
- Spatial direct messaging detected by bivariate Moran☆33Jul 16, 2025Updated last year
- R client for the OmniPath web service☆173Sep 9, 2026Updated last week
- Multi-resolution Variational Inference☆24Aug 31, 2026Updated 2 weeks ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆68Jun 9, 2025Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆196Aug 12, 2025Updated last year
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆140Mar 22, 2023Updated 3 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆89Oct 6, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python package to perform enrichment analysis from omics data.☆294Updated this week
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆203Jan 30, 2026Updated 7 months ago
- Quantifying experimental perturbations at single cell resolution☆117Sep 27, 2024Updated last year
- Methods for detecting doublets in single-cell sequencing data☆267Aug 31, 2026Updated 2 weeks ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 10 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆86Jul 25, 2025Updated last year
- Nextflow version of Sopa - spatial omics pipeline and analysis☆20Updated this week
- NicheNet: predict active ligand-target links between interacting cells☆679Jun 1, 2026Updated 3 months ago
- An AnnData-based framework for integrated proteomics analysis☆30Sep 7, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Learning cell communication from spatial graphs of cells☆121Jan 15, 2024Updated 2 years ago
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 9 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆60Aug 13, 2026Updated last month
- Automated, probabilistic assignment of cell types in scRNA-seq data☆216Jan 9, 2023Updated 3 years ago
- ☆65Feb 21, 2026Updated 6 months ago
- Easy single cell analysis platform for enrichment☆234Aug 9, 2026Updated last month
- An interface for Nested Stochastic Block Model for single cell analysis☆39Sep 2, 2026Updated 2 weeks ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆125Jan 22, 2024Updated 2 years ago
- R package to do the Ligand Receptor Analysis Visualization☆50Aug 18, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated 2 years ago
- Geometry-preserving random sampling☆98Oct 29, 2024Updated last year
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆16Aug 17, 2023Updated 3 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆79Jan 17, 2025Updated last year
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆99Apr 30, 2026Updated 4 months ago
- BANKSY: spatial clustering☆162May 30, 2026Updated 3 months ago