quon-titative-biology / scProjection
Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection
☆13Updated last year
Alternatives and similar repositories for scProjection:
Users that are interested in scProjection are comparing it to the libraries listed below
- Cell-type Relationship Analysis Workflow Done Across Distances☆29Updated 2 weeks ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated last week
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated last month
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- Information-based dimensionality reduction☆29Updated 2 months ago
- CAST package☆29Updated 3 months ago
- ☆29Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 2 months ago
- iterative clustering pipeline of big single cell datasets.☆28Updated last week
- ☆11Updated 2 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 11 months ago
- Parse ArchR arrow files to anndata h5ad☆14Updated last year
- ☆34Updated 4 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆22Updated 3 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆14Updated 4 months ago
- ☆29Updated 3 weeks ago
- ☆20Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 months ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- Individual level Differential Expression Analysis for Single cells☆23Updated 2 years ago
- ☆22Updated 4 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆31Updated 3 years ago
- RNA velocity validation☆23Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 7 months ago
- Material for the "Advanced topics in single-cell analysis" course (2022 edition)☆16Updated 2 years ago
- Inference of TCR motifs☆29Updated 2 weeks ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 3 months ago
- Difference in Intercellular Communication from scRNA-seq data☆21Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 10 months ago