theislab / cross_system_integrationLinks
☆13Updated 2 months ago
Alternatives and similar repositories for cross_system_integration
Users that are interested in cross_system_integration are comparing it to the libraries listed below
Sorting:
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 2 months ago
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆22Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆50Updated 9 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- iterative clustering pipeline of big single cell datasets.☆33Updated this week
- Multi-resolution Variational Inference☆23Updated 2 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- Information-based dimensionality reduction☆29Updated 8 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last week
- ☆29Updated 5 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 11 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 2 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 5 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆36Updated 2 months ago
- Parse ArchR arrow files to anndata h5ad☆14Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 3 months ago
- Single cell omics biology annotations☆51Updated 4 months ago
- Identifying external communication signals using single-cell transcriptomics data☆20Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 11 months ago
- ☆37Updated 2 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 7 months ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆34Updated 3 months ago