theislab / cross_system_integration
☆12Updated last month
Alternatives and similar repositories for cross_system_integration:
Users that are interested in cross_system_integration are comparing it to the libraries listed below
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- Information-based dimensionality reduction☆29Updated 4 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- ☆16Updated 9 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated last month
- ☆29Updated 2 years ago
- Multi-resolution Variational Inference☆22Updated last month
- A modular tool for proportion analysis in single-cell sequencing data☆19Updated 3 months ago
- ☆17Updated 2 weeks ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆19Updated 2 years ago
- ☆30Updated 3 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆49Updated this week
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆17Updated last month
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 6 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Reproducibility notebooks for scPoli☆16Updated 2 years ago
- Single-cell Case Control Analysis☆48Updated 6 months ago
- ☆36Updated 7 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆76Updated last year
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 2 months ago
- ☆40Updated 4 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- Parse ArchR arrow files to anndata h5ad☆13Updated last year