openpipelines-bio / openpipeline
☆30Updated this week
Alternatives and similar repositories for openpipeline:
Users that are interested in openpipeline are comparing it to the libraries listed below
- An r package that works as a wrapper to homologene☆43Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- ☆29Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- ☆22Updated 4 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 11 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 9 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 2 weeks ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆40Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 9 months ago
- ☆16Updated 2 weeks ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 5 months ago
- .h5mu files interface for Seurat☆29Updated last year
- Bead-based single-cell atac processing☆31Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 9 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 weeks ago
- ☆30Updated 2 months ago
- Cell type pipes for R☆51Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 9 months ago