☆35May 5, 2026Updated this week
Alternatives and similar repositories for openpipeline
Users that are interested in openpipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- script + metadata = standalone component☆45Apr 17, 2026Updated 2 weeks ago
- Formalizing and benchmarking open problems in single-cell genomics☆56Jun 11, 2025Updated 10 months ago
- Sample representation benchmark for single-cell data☆13Aug 11, 2025Updated 8 months ago
- Multi-modal single cell analysis pipelines☆62Dec 11, 2025Updated 4 months ago
- ☆14Apr 17, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Automatically annotate cell types, consistently across samples.☆20Apr 30, 2026Updated last week
- Tutorials for learning scverse☆20Apr 30, 2026Updated last week
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- R package for normalisation of spatial transcriptomics data☆18Jan 21, 2026Updated 3 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Oct 7, 2024Updated last year
- RA Synovial Single-cell Multimodal Cell Atlas☆21Mar 6, 2024Updated 2 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆25Feb 26, 2026Updated 2 months ago
- Visualising data frames as funky heatmaps 📊☆198Dec 12, 2025Updated 4 months ago
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆55Apr 22, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Log all process output to a file, for R☆10Apr 6, 2018Updated 8 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago
- Code and documentation for the curation of cellxgene datasets☆54Updated this week
- Multimodal Data (.h5mu) implementation for Python☆120Updated this week
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆31Jun 19, 2024Updated last year
- Python package to interactively annotate histological images within a jupyter notebook☆18Oct 20, 2025Updated 6 months ago
- cell type specific, trait-associated gene regulation☆30Mar 31, 2025Updated last year
- CUDA implementation of RTXX algorithm for multiplication of matrix and its transpose X^T X☆19Jun 9, 2025Updated 10 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆25Apr 30, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A python port of the R package SCTransform:☆21Jul 10, 2021Updated 4 years ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆55Apr 29, 2026Updated last week
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆39Dec 17, 2025Updated 4 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆27Jan 14, 2020Updated 6 years ago
- Developmental Spatiotemporal Optimal Transport☆14Mar 19, 2025Updated last year
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Nov 4, 2023Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆122Apr 26, 2025Updated last year
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- ☆47Jan 28, 2026Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Invariant Representation learning☆20Jun 26, 2024Updated last year
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Apr 27, 2026Updated last week
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆31Apr 16, 2026Updated 3 weeks ago
- An R Package for Discovering Rhythmicity in Biological Data with an Interactive Web Interface☆12Mar 7, 2022Updated 4 years ago
- a dataloader to work with large single cell datasets from lamindb☆40Apr 10, 2026Updated 3 weeks ago
- ☆26Mar 30, 2026Updated last month
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Apr 13, 2026Updated 3 weeks ago