☆49Jan 28, 2026Updated 9 months ago
Alternatives and similar repositories for sctk
Users that are interested in sctk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integration of gut cell atlases☆42May 6, 2026Updated 5 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆32Aug 11, 2022Updated 4 years ago
- Nextflow implementation of scAutoQC pipeline☆12Sep 30, 2026Updated last month
- A set of files to do genomics analysis on python☆19Jun 5, 2025Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆87Feb 17, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆29Jan 3, 2025Updated last year
- A collection of resources and knowledge for analysis of scATAC+scRNA multi omics data☆10Sep 16, 2022Updated 4 years ago
- Code used to process the data of the HBCA project☆36Feb 9, 2024Updated 2 years ago
- scRNA-seq analysis of EENT-ONB☆22Jan 14, 2024Updated 2 years ago
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- Analysis framework for morphological profiling data☆14Updated this week
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆22Jun 9, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆93Mar 20, 2025Updated last year
- Python package to interactively annotate histological images within a jupyter notebook☆19Oct 20, 2025Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆28Feb 26, 2026Updated 8 months ago
- Join subcellular Visium HD bins into cells☆147Sep 14, 2026Updated last month
- reticulate-free single cell format conversion☆223Jul 10, 2026Updated 3 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆98Updated this week
- ☆17Apr 11, 2024Updated 2 years ago
- ☆28May 22, 2025Updated last year
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Sanger Cellular Genetics single-cell ATAC-seq pipeline.☆13Aug 25, 2023Updated 3 years ago
- ☆10Mar 12, 2023Updated 3 years ago
- Differential spatial enrichment across conditions☆31Jul 14, 2026Updated 3 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Oct 20, 2026Updated last week
- ☆103Updated this week
- Deep learning for single-cell Gene Regulatory Networks☆15Oct 13, 2026Updated 2 weeks ago
- Invariant Representation learning☆20Jun 26, 2024Updated 2 years ago
- ☆54May 18, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cross-attention-based cell-cell interaction inference from ST data.☆22Updated this week
- ☆13Jun 9, 2025Updated last year
- scripts associated with NAFLD-NASH project☆31May 23, 2024Updated 2 years ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆36Nov 4, 2023Updated 2 years ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆32Updated this week
- A tool for semi-automatic cell type harmonization and integration☆125Mar 9, 2026Updated 7 months ago
- ☆10Jul 6, 2024Updated 2 years ago