☆49Jan 28, 2026Updated 7 months ago
Alternatives and similar repositories for sctk
Users that are interested in sctk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integration of gut cell atlases☆41May 6, 2026Updated 4 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆32Aug 11, 2022Updated 4 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆86Feb 17, 2025Updated last year
- Code used to process the data of the HBCA project☆35Feb 9, 2024Updated 2 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆29Jan 3, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A set of files to do genomics analysis on python☆19Jun 5, 2025Updated last year
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- A collection of resources and knowledge for analysis of scATAC+scRNA multi omics data☆10Sep 16, 2022Updated 4 years ago
- scRNA-seq analysis of EENT-ONB☆22Jan 14, 2024Updated 2 years ago
- Python package to interactively annotate histological images within a jupyter notebook☆19Oct 20, 2025Updated 11 months ago
- Nextflow implementation of scAutoQC pipeline☆12Jul 9, 2026Updated 2 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆29Feb 26, 2026Updated 6 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆91Mar 20, 2025Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆97Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- reticulate-free single cell format conversion☆220Jul 10, 2026Updated 2 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- Invariant Representation learning☆20Jun 26, 2024Updated 2 years ago
- Differential spatial enrichment across conditions☆28Jul 14, 2026Updated 2 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Updated this week
- ☆101Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Nov 8, 2025Updated 10 months ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated last year
- ☆54May 18, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Aligning gene expression trajectories of single-cell reference and query systems☆93Jul 28, 2026Updated last month
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- scripts associated with NAFLD-NASH project☆31May 23, 2024Updated 2 years ago
- Code used to benchmark Xenium☆86Apr 10, 2026Updated 5 months ago
- Cross-attention-based cell-cell interaction inference from ST data.☆22Jul 31, 2026Updated last month
- Capybara: A computational tool to measure cell identity and fate transitions☆64May 23, 2022Updated 4 years ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆31Updated this week
- ☆10Jul 6, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆394Updated this week
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆24Apr 8, 2025Updated last year
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆24Dec 16, 2025Updated 9 months ago
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆42Nov 18, 2021Updated 4 years ago
- Automatically annotate cell types, consistently across samples.☆28Updated this week
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated 2 years ago