Teichlab / sctkLinks
☆45Updated this week
Alternatives and similar repositories for sctk
Users that are interested in sctk are comparing it to the libraries listed below
Sorting:
- ☆35Updated 10 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆36Updated 8 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆97Updated 8 months ago
- .h5mu files interface for Seurat☆32Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated last month
- Cell-type Relationship Analysis Workflow Done Across Distances☆39Updated 2 months ago
- ☆17Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 8 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆24Updated 4 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Updated last year
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆94Updated last month
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- Functional Inference of Gene Regulation☆51Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆83Updated last year
- ☆29Updated 2 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated this week
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- ☆33Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆45Updated 3 years ago