Janezjz / cellanovaLinks
CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration
☆50Updated 9 months ago
Alternatives and similar repositories for cellanova
Users that are interested in cellanova are comparing it to the libraries listed below
Sorting:
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- iterative clustering pipeline of big single cell datasets.☆33Updated this week
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 11 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 2 months ago
- R implementation of GeneTrajectory☆63Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 2 months ago
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆43Updated 3 weeks ago
- Functional Inference of Gene Regulation☆46Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last week
- ☆56Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆32Updated 9 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated last month
- ☆45Updated 2 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆64Updated 9 months ago
- scWGCNA☆61Updated 2 years ago
- ☆32Updated 7 months ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆40Updated this week
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Methods for decontamination of single cell data☆47Updated 6 months ago
- ☆41Updated 4 years ago
- ☆56Updated 2 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 4 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago