Janezjz / cellanovaLinks
CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration
☆47Updated 7 months ago
Alternatives and similar repositories for cellanova
Users that are interested in cellanova are comparing it to the libraries listed below
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆65Updated 7 months ago
- R implementation of GeneTrajectory☆58Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated 3 weeks ago
- ☆40Updated 5 months ago
- ☆32Updated 9 months ago
- Functional Inference of Gene Regulation☆44Updated 10 months ago
- cell type specific, trait-associated gene regulation☆26Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆79Updated this week
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated 11 months ago
- iterative clustering pipeline of big single cell datasets.☆31Updated 3 weeks ago
- ☆32Updated 4 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆74Updated last month
- scWGCNA☆60Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆51Updated this week
- ☆41Updated 4 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 4 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 4 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- R package for pathway analysis in scRNA-seq data☆74Updated 9 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆26Updated last month
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- ☆54Updated last year
- .h5mu files interface for Seurat☆29Updated last year
- ☆41Updated 2 weeks ago
- Multi-resolution Variational Inference☆22Updated 2 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆74Updated 2 months ago
- ☆18Updated last month