CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration
☆54Oct 31, 2024Updated last year
Alternatives and similar repositories for cellanova
Users that are interested in cellanova are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 8 months ago
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆83Mar 19, 2026Updated last week
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated 8 months ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆41Jan 12, 2026Updated 2 months ago
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆17Mar 18, 2026Updated last week
- ☆43Jan 26, 2026Updated 2 months ago
- Implementation of CellNEST method☆61Feb 25, 2026Updated last month
- Python playground for cell-type-specific biology☆12Jan 20, 2026Updated 2 months ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆89Apr 16, 2025Updated 11 months ago
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated last month
- Non-parametric density inference for single-cell analysis.☆73Mar 20, 2026Updated last week
- ☆59Feb 14, 2025Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Toolkit for metacell analysis☆23Aug 8, 2024Updated last year
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆18Nov 18, 2025Updated 4 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆128May 5, 2025Updated 10 months ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆13Feb 5, 2026Updated last month
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 7 months ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- ☆65Sep 13, 2024Updated last year
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Methods to discover gene programs on single-cell data☆178Sep 26, 2025Updated 6 months ago
- Publically accessible code for DIISCO method☆12Oct 15, 2025Updated 5 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Feb 14, 2025Updated last year
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆236Mar 14, 2026Updated last week
- Multi-modal single cell analysis pipelines☆62Dec 11, 2025Updated 3 months ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆48May 14, 2025Updated 10 months ago
- Deep Generative Modeling of RNA Velocity☆37Oct 21, 2025Updated 5 months ago
- A tool for semi-automatic cell type harmonization and integration☆120Mar 9, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Significance analysis for clustering single-cell RNA-sequencing data☆123Sep 7, 2024Updated last year
- R package for semi-supervised single-cell data integration☆97Jan 27, 2026Updated last month
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago
- Spot pseudo-Imager on top of histology☆44Dec 12, 2025Updated 3 months ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆33Apr 9, 2025Updated 11 months ago
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated last year