jenniferlu717 / KrakenToolsLinks
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
☆345Updated last year
Alternatives and similar repositories for KrakenTools
Users that are interested in KrakenTools are comparing it to the libraries listed below
Sorting:
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆376Updated last month
- Scan contig files against PubMLST typing schemes☆238Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline☆356Updated last week
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆353Updated 3 weeks ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆311Updated 4 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆325Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆430Updated last year
- Bacterial ribosomal RNA predictor☆247Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆260Updated 7 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆342Updated this week
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆428Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆235Updated 4 years ago
- Assembly and binning of metagenomes☆241Updated last week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆416Updated 5 months ago
- Tool to plot synteny and structural rearrangements between genomes☆313Updated 3 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆376Updated last month
- Rapid large-scale prokaryote pan genome analysis☆354Updated 3 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆217Updated last week
- Tools for fast and flexible genome assembly scaffolding and improvement☆516Updated last year
- Fast Whole-Genome Similarity (ANI) Estimation☆416Updated last year
- Classifier for metagenomic sequences☆261Updated 3 weeks ago
- Synteny and Rearrangement Identifier☆396Updated 2 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆285Updated 2 months ago
- ☆257Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆532Updated 2 weeks ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆206Updated 11 months ago
- An updated pipeline for pangenome investigation☆306Updated 4 months ago
- adapter trimmer for Oxford Nanopore reads☆366Updated last year
- Finds SNP sites from a multi-FASTA alignment file☆261Updated 4 years ago