DiltheyLab / MetaMapsLinks
Long-read metagenomic analysis
☆101Updated last year
Alternatives and similar repositories for MetaMaps
Users that are interested in MetaMaps are comparing it to the libraries listed below
Sorting:
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- ☆82Updated last year
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- Long-read mock community experiments☆105Updated 3 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- IS mapping software☆54Updated 3 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆80Updated 4 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆38Updated 3 weeks ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- A tool for Racon polishing of miniasm assemblies☆76Updated 3 weeks ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆97Updated 2 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 3 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆69Updated 3 years ago
- Synteny Imager☆63Updated 10 months ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆59Updated 5 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆44Updated 10 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆68Updated 4 years ago
- Estimate metagenomic coverage and sequence diversity☆54Updated 10 months ago