Long-read metagenomic analysis
โ112Oct 10, 2023Updated 2 years ago
Alternatives and similar repositories for MetaMaps
Users that are interested in MetaMaps are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencingโ71Aug 10, 2021Updated 5 years ago
- ๐ Interactive analysis of metagenomics dataโ455Sep 17, 2025Updated last year
- Pan-genome inference and genotyping with long noisy or short accurate readsโ120Dec 13, 2024Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHashโ42Jan 10, 2023Updated 3 years ago
- Automated strain separation of low-complexity metagenomesโ52Nov 10, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer โข AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- โกโ ๏ธ Assemble bacterial isolate genomes from Illumina paired-end readsโ268Jun 11, 2026Updated 3 months ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Mโฆโ13Jul 2, 2022Updated 4 years ago
- Real-time species-typing visualisation for nanopore data.โ12Apr 11, 2023Updated 3 years ago
- A fast approximate aligner for long DNA sequencesโ290Oct 11, 2024Updated last year
- Run multiple programs to check if a VCF is usableโ11May 15, 2020Updated 6 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)โ62Apr 1, 2023Updated 3 years ago
- hybrid assembly pipeline for bacterial genomesโ653Jul 29, 2026Updated last month
- A tool for removing redundant genomes from a set of assembliesโ86Jul 24, 2026Updated last month
- Long read / genome alignment softwareโ331Dec 16, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer โข AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Histosketching Using Little Kmersโ56May 25, 2023Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomesโ16Jun 26, 2018Updated 8 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmerโ36Aug 4, 2021Updated 5 years ago
- Long read alignerโ115May 26, 2023Updated 3 years ago
- Recombination-free treesโ73Jul 24, 2026Updated last month
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encodingโ23Aug 23, 2023Updated 3 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.โ622May 20, 2026Updated 3 months ago
- Population analysis PIPEline ๐ ๐งฌโ28Mar 2, 2026Updated 6 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.โ231May 9, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient โข AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore readsโ118Nov 20, 2023Updated 2 years ago
- A new high-resolution long-read metagenome assembler for even noisy readsโ169Sep 9, 2026Updated last week
- Accurate metagenomic profiling && Fast large-scale sequence/genome searchingโ222Apr 24, 2026Updated 4 months ago
- Code to create a PRG from a Multiple Sequence Alignment fileโ25Sep 10, 2025Updated last year
- A complete pipeline for metagenomic analysisโ454Aug 28, 2026Updated 3 weeks ago
- PopPUNK ๐จโ๐ค (POPulation Partitioning Using Nucleotide Kmers)โ111Jun 2, 2026Updated 3 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomesโ56Sep 1, 2026Updated 2 weeks ago
- โ85Sep 13, 2023Updated 3 years ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasetsโ25Apr 30, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean โข AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Detection of incorrectly labeled sequences across kingdomsโ88Oct 25, 2022Updated 3 years ago
- quality filtering tool for long readsโ416Sep 17, 2025Updated last year
- frame-shift correction for long-read (meta)genomicsโ33Dec 11, 2023Updated 2 years ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing dataโ527May 20, 2026Updated 3 months ago
- Fast genome and metagenome distance estimation using MinHashโ452Sep 19, 2025Updated last year
- โ21Feb 13, 2020Updated 6 years ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).โ13Apr 20, 2021Updated 5 years ago