DiltheyLab / MetaMaps
Long-read metagenomic analysis
☆101Updated last year
Alternatives and similar repositories for MetaMaps:
Users that are interested in MetaMaps are comparing it to the libraries listed below
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- ☆81Updated last year
- IS mapping software☆53Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆71Updated 5 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆40Updated 3 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆75Updated 7 months ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆97Updated last week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆116Updated last year
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆79Updated 4 years ago
- Long-read mock community experiments☆104Updated 3 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆35Updated 2 weeks ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆73Updated last year
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆69Updated 2 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 11 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆64Updated 4 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 9 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated 11 months ago
- de novo virus assembler of Illumina paired reads☆55Updated 3 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆57Updated 5 years ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆47Updated last year
- Estimate metagenomic coverage and sequence diversity☆48Updated 7 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆73Updated last year