aindj / k-SLAMLinks
k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets
☆23Updated 6 years ago
Alternatives and similar repositories for k-SLAM
Users that are interested in k-SLAM are comparing it to the libraries listed below
Sorting:
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- De novo Extraction of Strains from MetAgeNomes☆70Updated 5 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 6 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- ☆14Updated last year
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- rapidly rid reads of horrid humans☆15Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Toolkit for preparing genomes for submission to NCBI☆30Updated 3 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Interactive tools for metagenome visualization and binning in R☆28Updated 7 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Updated last year
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Repository of our application for human-augmented binning☆28Updated 4 years ago