aindj / k-SLAM
k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets
☆23Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for k-SLAM
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- ☆13Updated 11 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated last year
- De novo Extraction of Strains from MetAgeNomes☆69Updated 4 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆24Updated 6 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆23Updated last month
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆17Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆28Updated 6 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 3 weeks ago
- ☆34Updated 2 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 3 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- Find Unique genomic Regions☆29Updated this week
- Ley Lab MetaGenome Profiler DataBase generator☆47Updated 2 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- Kraken2 Server☆21Updated 10 months ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆42Updated 3 years ago
- Strain Resolution ON Graphs☆47Updated last year
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago