Antimicrobial Resistance Identification By Assembly
☆186Oct 12, 2023Updated 2 years ago
Alternatives and similar repositories for ariba
Users that are interested in ariba are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Short Read Sequence Typing for Bacterial Pathogens☆149Jun 20, 2021Updated 5 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆502Jul 17, 2026Updated last week
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆380Jul 12, 2026Updated last week
- "Reads to report" for public health and clinical microbiology☆144Dec 9, 2025Updated 7 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆261Jun 11, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Rapid haploid variant calling and core genome alignment☆594Dec 12, 2025Updated 7 months ago
- ☆144Updated this week
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆180Apr 22, 2026Updated 3 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆203Jun 10, 2026Updated last month
- A tool to circularize genome assemblies☆257Apr 6, 2024Updated 2 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆425May 20, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆664Jul 10, 2026Updated 2 weeks ago
- Rapid large-scale prokaryote pan genome analysis☆378Nov 3, 2025Updated 8 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆519May 21, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆221Aug 27, 2025Updated 10 months ago
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- An updated pipeline for pangenome investigation☆367Jul 2, 2026Updated 3 weeks ago
- Pan-genome wide association studies☆219May 29, 2024Updated 2 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆124Aug 24, 2023Updated 2 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65May 11, 2020Updated 6 years ago
- Making whole bacterial genome sequencing data analysis easy☆114Apr 22, 2025Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆100Jun 8, 2026Updated last month
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆133Feb 26, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆157Oct 2, 2025Updated 9 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- 🌈 Interactive analysis of metagenomics data☆454Sep 17, 2025Updated 10 months ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Jun 11, 2020Updated 6 years ago
- Antibiotic resistance prediction in minutes☆119Mar 27, 2026Updated 3 months ago
- hybrid assembly pipeline for bacterial genomes☆648Jul 7, 2026Updated 2 weeks ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 4 months ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆252Jan 18, 2024Updated 2 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆179Apr 16, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pairwise SNP distance matrix from a FASTA sequence alignment☆156Dec 31, 2025Updated 6 months ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆67Apr 30, 2026Updated 2 months ago
- Finds SNP sites from a multi-FASTA alignment file☆278Dec 16, 2020Updated 5 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆101Jul 8, 2022Updated 4 years ago
- Fast genome and metagenome distance estimation using MinHash☆448Sep 19, 2025Updated 10 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆345Updated this week
- Scan contig files against PubMLST typing schemes☆294Jun 17, 2026Updated last month