A complete pipeline for metagenomic analysis
☆439Mar 11, 2026Updated last month
Alternatives and similar repositories for SqueezeMeta
Users that are interested in SqueezeMeta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ATLAS - Three commands to start analyzing your metagenome data☆404Nov 28, 2025Updated 4 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆328Mar 30, 2026Updated last week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆228Apr 1, 2026Updated last week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆467Jul 28, 2023Updated 2 years ago
- Read alignment statistics for metagenomics☆396Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A flexible pipeline for complete analysis of bacterial genomes☆502Updated this week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆618Feb 18, 2026Updated last month
- Rapid comparison and dereplication of genomes☆335Nov 10, 2025Updated 5 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Mar 31, 2026Updated last week
- A robust, extensible metagenomics pipeline☆175Mar 30, 2026Updated last week
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆200Apr 3, 2026Updated last week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆301Feb 3, 2026Updated 2 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆587Feb 21, 2026Updated last month
- Bioinformatics program inStrain☆184Mar 12, 2026Updated last month
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- An updated pipeline for pangenome investigation☆353Jan 15, 2026Updated 2 months ago
- Making whole bacterial genome sequencing data analysis easy☆113Apr 22, 2025Updated 11 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- A user-friendly workflow for phylogenomics☆226Feb 5, 2026Updated 2 months ago
- CAMISIM: Simulating metagenomes and microbial communities☆223Apr 1, 2026Updated last week
- 🌈 Interactive analysis of metagenomics data☆447Sep 17, 2025Updated 6 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆185Updated this week
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆398Mar 16, 2026Updated 3 weeks ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆220Mar 24, 2026Updated 2 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆87Mar 12, 2026Updated last month
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆148Jan 9, 2026Updated 3 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆408Mar 26, 2026Updated 2 weeks ago
- DAS Tool☆171May 2, 2024Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆371Aug 1, 2025Updated 8 months ago
- geNomad: Identification of mobile genetic elements☆301Mar 29, 2026Updated 2 weeks ago
- (Meta-)genome screening for functional and natural product gene sequences☆103Mar 30, 2026Updated last week
- Build a partitioned pangenome graph from microbial genomes☆296Mar 30, 2026Updated last week
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Assembly and binning of metagenomes☆286Updated this week
- Variational autoencoder for metagenomic binning☆319Feb 23, 2026Updated last month
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆106Jan 22, 2026Updated 2 months ago
- Long-read metagenomic analysis☆110Oct 10, 2023Updated 2 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆161Apr 23, 2025Updated 11 months ago
- An R package for downstream data analysis of microbiome omics data☆274Updated this week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆406Mar 2, 2026Updated last month