jtamames / SqueezeMetaLinks
A complete pipeline for metagenomic analysis
☆428Updated 2 weeks ago
Alternatives and similar repositories for SqueezeMeta
Users that are interested in SqueezeMeta are comparing it to the libraries listed below
Sorting:
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆441Updated 2 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆350Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆550Updated 3 weeks ago
- 🌈 Interactive analysis of metagenomics data☆423Updated last month
- bioBakery tools for meta'omic profiling☆284Updated 3 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆321Updated 6 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆385Updated 3 months ago
- Rapid large-scale prokaryote pan genome analysis☆354Updated 3 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆423Updated 7 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- Genome assembly evaluation tool☆464Updated 10 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆529Updated last year
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆366Updated this week
- Eukaryotic Genome Annotation Pipeline☆361Updated 2 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆435Updated last year
- ATLAS - Three commands to start analyzing your metagenome data☆399Updated last week
- Rapid comparison and dereplication of genomes☆310Updated 3 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆354Updated 2 weeks ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆384Updated this week
- Code, unit tests, and tutorials for running PICRUSt2☆369Updated 5 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆472Updated last week
- Gene cluster comparison figure generator☆608Updated 9 months ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆434Updated 4 months ago
- Rapid haploid variant calling and core genome alignment☆542Updated last year
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆214Updated last week
- hybrid assembly pipeline for bacterial genomes☆613Updated last year
- Mummer alignment tool☆524Updated 7 months ago
- Plotting scripts for long read sequencing data☆502Updated 3 weeks ago
- adapter trimmer for Oxford Nanopore reads☆372Updated last year
- Tutorials on phylogenetic and phylogenomic inference☆389Updated 2 years ago