infphilo / centrifugeLinks
Classifier for metagenomic sequences
☆29Updated 6 years ago
Alternatives and similar repositories for centrifuge
Users that are interested in centrifuge are comparing it to the libraries listed below
Sorting:
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- Automatically exported from code.google.com/p/prottest3☆37Updated 7 years ago
- ☆84Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆81Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Development version of Easyfig☆100Updated last year
- de.NBI Nanopore Training Course☆20Updated 2 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- ☆32Updated 2 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆71Updated 3 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 5 years ago
- ☆78Updated 4 years ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Updated 5 months ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆48Updated last year
- Synteny Imager☆64Updated last month
- Long-read metagenomic analysis☆104Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 4 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆82Updated last month
- Micro 612 genomics workshop☆37Updated 4 years ago
- Microbiome classification pipeline☆66Updated 3 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 6 years ago
- Visualize whole genome alignments as linear maps☆73Updated 3 weeks ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago