Classifier for metagenomic sequences
☆30Nov 12, 2018Updated 7 years ago
Alternatives and similar repositories for centrifuge
Users that are interested in centrifuge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Classifier for metagenomic sequences☆275Apr 15, 2026Updated 3 weeks ago
- Repository for all Ocean Sampling Day related source code with information on how-to acquire OSD data☆14May 14, 2024Updated last year
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 7 years ago
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Sep 4, 2017Updated 8 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- 🌈 Interactive analysis of metagenomics data☆448Sep 17, 2025Updated 7 months ago
- ☆17Apr 1, 2018Updated 8 years ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- ☆16Jan 12, 2026Updated 3 months ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- The second version of the Kraken taxonomic sequence classification system☆896Updated this week
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆245Jan 18, 2024Updated 2 years ago
- ☆15Sep 26, 2019Updated 6 years ago
- ☆22Nov 12, 2025Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Various scripts for efficient processing of 10k Salmonella genomes☆16Sep 16, 2021Updated 4 years ago
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- http://huttenhower.sph.harvard.edu/waafle☆24Feb 26, 2026Updated 2 months ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 5 years ago
- Virus discovery☆17Apr 25, 2026Updated last week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆597Apr 21, 2026Updated 2 weeks ago
- S3proxy provides a simple REST-interface to files and keys stored on the AWS S3 service.☆12Apr 2, 2014Updated 12 years ago
- Draw Circos in Python☆31Sep 19, 2022Updated 3 years ago
- A software for haplotype inference☆13May 13, 2025Updated 11 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- [DEPRECATED] Bamboo: a tool for quality control and error profiling of long-read sequencing data.☆15Mar 26, 2026Updated last month
- hybrid assembly pipeline for bacterial genomes☆639Jul 25, 2024Updated last year
- Rapid haploid variant calling and core genome alignment☆583Dec 12, 2025Updated 4 months ago
- ☆15Sep 15, 2022Updated 3 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year
- Latest MOCAT2 version☆18Mar 8, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- Primalscheme3. Generation of highly multiplex primerschemes☆22Dec 4, 2025Updated 5 months ago
- Collection of commonly used RDP Tools for easy building☆52Jun 8, 2023Updated 2 years ago
- ☆23Mar 2, 2019Updated 7 years ago
- ☆18Apr 6, 2022Updated 4 years ago
- Workflows for germline short variant discovery with GATK4☆141May 7, 2021Updated 5 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Jun 24, 2021Updated 4 years ago