infphilo / centrifugeView external linksLinks
Classifier for metagenomic sequences
☆30Nov 12, 2018Updated 7 years ago
Alternatives and similar repositories for centrifuge
Users that are interested in centrifuge are comparing it to the libraries listed below
Sorting:
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 7 years ago
- Classifier for metagenomic sequences☆270Jun 20, 2025Updated 7 months ago
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Sep 4, 2017Updated 8 years ago
- Repository for all Ocean Sampling Day related source code with information on how-to acquire OSD data☆14May 14, 2024Updated last year
- Draw Circos in Python☆31Sep 19, 2022Updated 3 years ago
- 🌈 Interactive analysis of metagenomics data☆442Sep 17, 2025Updated 4 months ago
- ☆22Nov 12, 2025Updated 3 months ago
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 5 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- ☆11Jun 14, 2023Updated 2 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- A software for haplotype inference☆13May 13, 2025Updated 9 months ago
- Extremely fast Variant Call Format annotation☆11Dec 25, 2024Updated last year
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆18Mar 18, 2025Updated 10 months ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 2 years ago
- Collection of commonly used RDP Tools for easy building☆51Jun 8, 2023Updated 2 years ago
- The second version of the Kraken taxonomic sequence classification system☆868Jan 30, 2026Updated 2 weeks ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 4 years ago
- ☆13Jan 12, 2026Updated last month
- Bamboo: a tool for quality control and error profiling of long-read sequencing data.☆15Oct 8, 2024Updated last year
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- Identification of structural variations☆12Jul 22, 2022Updated 3 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Feb 20, 2021Updated 4 years ago
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- This is a repository for CAMPER.☆16Mar 18, 2024Updated last year
- Streamlined duo/trio analysis and pedigree haplotyping: from VCF to interactive HTML☆15Oct 30, 2024Updated last year
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 8 years ago
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- A 10x faster version base on official trimmomatic. The results of trimmomatic-pigz are exactly the same with official trimmomatic.☆16Nov 20, 2024Updated last year
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 2 years ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆243Jan 18, 2024Updated 2 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆574Updated this week
- New version☆35Dec 12, 2016Updated 9 years ago
- Standard database for the TBProfiler tool☆31Aug 19, 2025Updated 5 months ago
- A tool to find and visualize rearrangements in DNA sequences☆16Sep 16, 2019Updated 6 years ago