Classifier for metagenomic sequences
☆30Nov 12, 2018Updated 7 years ago
Alternatives and similar repositories for centrifuge
Users that are interested in centrifuge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Classifier for metagenomic sequences☆274Apr 15, 2026Updated 2 months ago
- Repository for all Ocean Sampling Day related source code with information on how-to acquire OSD data☆14May 14, 2024Updated 2 years ago
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 7 years ago
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Sep 4, 2017Updated 8 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 🌈 Interactive analysis of metagenomics data☆453Sep 17, 2025Updated 9 months ago
- ☆17Apr 1, 2018Updated 8 years ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- ☆16Jan 12, 2026Updated 5 months ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- The second version of the Kraken taxonomic sequence classification system☆912Jun 10, 2026Updated last week
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆249Jan 18, 2024Updated 2 years ago
- ☆15Sep 26, 2019Updated 6 years ago
- ☆22Nov 12, 2025Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19May 26, 2026Updated 3 weeks ago
- Various scripts for efficient processing of 10k Salmonella genomes☆16Sep 16, 2021Updated 4 years ago
- multi-tool QC for minion data☆10May 28, 2018Updated 8 years ago
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 3, 2026Updated 2 weeks ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 5 years ago
- Virus discovery☆17May 27, 2026Updated 3 weeks ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆607May 20, 2026Updated 3 weeks ago
- S3proxy provides a simple REST-interface to files and keys stored on the AWS S3 service.☆12Apr 2, 2014Updated 12 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Draw Circos in Python☆31Sep 19, 2022Updated 3 years ago
- A software for haplotype inference☆13May 13, 2025Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- [DEPRECATED] Bamboo: a tool for quality control and error profiling of long-read sequencing data.☆15Mar 26, 2026Updated 2 months ago
- hybrid assembly pipeline for bacterial genomes☆643Jul 25, 2024Updated last year
- Rapid haploid variant calling and core genome alignment☆587Dec 12, 2025Updated 6 months ago
- ☆15Sep 15, 2022Updated 3 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Latest MOCAT2 version☆18Mar 8, 2021Updated 5 years ago
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- Primalscheme3. Generation of highly multiplex primerschemes☆23Dec 4, 2025Updated 6 months ago
- Collection of commonly used RDP Tools for easy building☆52Jun 8, 2023Updated 3 years ago
- ☆24Mar 2, 2019Updated 7 years ago
- ☆18Apr 6, 2022Updated 4 years ago