Recentrifuge: robust comparative analysis and contamination removal for metagenomics
☆101Feb 10, 2026Updated last month
Alternatives and similar repositories for recentrifuge
Users that are interested in recentrifuge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🌈 Interactive analysis of metagenomics data☆445Sep 17, 2025Updated 6 months ago
- ☆84Sep 13, 2023Updated 2 years ago
- Classifier for metagenomic sequences☆271Jun 20, 2025Updated 9 months ago
- The second version of the Kraken taxonomic sequence classification system☆886Updated this week
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆168Mar 12, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Interactively explore metagenomes and more from a web browser.☆496Dec 22, 2021Updated 4 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 9 months ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆244Jan 18, 2024Updated 2 years ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆339Mar 16, 2026Updated 2 weeks ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆74Dec 28, 2019Updated 6 years ago
- Sequence correction provided by ONT Research☆502Dec 8, 2025Updated 3 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆301Apr 25, 2025Updated 11 months ago
- ☆23Sep 27, 2019Updated 6 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆371Aug 1, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Split Kmer Analysis☆66May 26, 2022Updated 3 years ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆104Mar 21, 2026Updated last week
- ☆137Updated this week
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Apr 9, 2024Updated last year
- Fast Whole-Genome Similarity (ANI) Estimation☆450Dec 16, 2025Updated 3 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 2 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆88Oct 25, 2022Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆171Mar 19, 2026Updated last week
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 4 years ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆74Jul 31, 2025Updated 7 months ago
- Rapid determination of appropriate reference genomes.☆100Jan 22, 2025Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- Long-read mock community experiments☆104Oct 8, 2021Updated 4 years ago
- ATLAS - Three commands to start analyzing your metagenome data☆403Nov 28, 2025Updated 4 months ago
- Long-read metagenomic analysis☆110Oct 10, 2023Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 26, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Trimming tool for Oxford Nanopore sequence data☆22Jun 22, 2021Updated 4 years ago
- a short-read polishing tool for long-read assemblies☆211Sep 19, 2025Updated 6 months ago
- Genome assembly evaluation tool☆508Nov 14, 2024Updated last year
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago
- ☆14Jan 20, 2016Updated 10 years ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆121Jan 22, 2025Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Aug 10, 2021Updated 4 years ago