khyox / recentrifugeLinks
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
☆96Updated 3 months ago
Alternatives and similar repositories for recentrifuge
Users that are interested in recentrifuge are comparing it to the libraries listed below
Sorting:
- A post sequencing QC tool for Oxford Nanopore sequencers☆100Updated last month
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆108Updated 2 weeks ago
- ☆84Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆140Updated last year
- A tool for Racon polishing of miniasm assemblies☆77Updated 2 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- Simple bacterial assembly and annotation pipeline☆75Updated 3 weeks ago
- REference Sequence annotation and CuRatIon Pipeline☆98Updated last week
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆117Updated 2 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆116Updated 2 years ago
- Interactive quality assessment of genome assemblies☆105Updated 3 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- ☆78Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆112Updated 2 months ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆81Updated 9 years ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆64Updated 2 weeks ago
- source code for EVM☆116Updated 8 months ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 6 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆109Updated last year
- Create a tree using Mash distances☆170Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆100Updated 3 years ago
- Create statistic summary of an Oxford Nanopore read dataset☆118Updated 2 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 2 months ago
- Synteny Imager☆64Updated last month