khyox / recentrifugeLinks
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
☆98Updated 4 months ago
Alternatives and similar repositories for recentrifuge
Users that are interested in recentrifuge are comparing it to the libraries listed below
Sorting:
- A tool for Racon polishing of miniasm assemblies☆77Updated last week
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆108Updated this week
- Pairwise SNP distance matrix from a FASTA sequence alignment☆140Updated last year
- Simple bacterial assembly and annotation pipeline☆77Updated this week
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- ☆83Updated 2 years ago
- Create a tree using Mash distances☆170Updated last year
- ☆79Updated 4 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆100Updated last month
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- Create statistic summary of an Oxford Nanopore read dataset☆122Updated 2 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆119Updated this week
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Interactive quality assessment of genome assemblies☆107Updated 4 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- source code for EVM☆117Updated 9 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- Metagenomic classification of long-read sequencing data☆94Updated this week
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated 2 weeks ago
- REference Sequence annotation and CuRatIon Pipeline☆97Updated last week
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆106Updated last year
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆111Updated last year
- 🔗Genome assembly scaffolder using minimizer graphs☆84Updated 11 months ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- Bioinformatics program inStrain☆174Updated 4 months ago