khyox / recentrifuge
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
☆91Updated last month
Alternatives and similar repositories for recentrifuge:
Users that are interested in recentrifuge are comparing it to the libraries listed below
- A tool for Racon polishing of miniasm assemblies☆74Updated 4 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated 10 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- Metagenomic classification of long-read sequencing data☆79Updated 3 weeks ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆103Updated 3 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆146Updated 2 months ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 5 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- ☆81Updated last year
- Synteny Imager☆61Updated 7 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆101Updated last year
- source code for EVM☆109Updated 4 months ago
- Interactive quality assessment of genome assemblies☆98Updated 2 weeks ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆133Updated last year
- Error correction for Illumina RNA-seq reads☆66Updated last year
- A scalable bacterial genome assembly, annotation and analysis pipeline☆73Updated last year
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 6 months ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated last year
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆99Updated last month
- Nanopore data assembler☆147Updated 3 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆95Updated 2 weeks ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- Simple bacterial assembly and annotation pipeline☆73Updated 2 weeks ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆47Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆160Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆145Updated last week