Kraken taxonomic sequence classification system
☆228Sep 27, 2021Updated 5 years ago
Alternatives and similar repositories for kraken
Users that are interested in kraken are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🌈 Interactive analysis of metagenomics data☆455Sep 17, 2025Updated last year
- The second version of the Kraken taxonomic sequence classification system☆943Updated this week
- Classifier for metagenomic sequences☆281Apr 15, 2026Updated 6 months ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48May 18, 2017Updated 9 years ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆249Jan 18, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆358Mar 16, 2026Updated 7 months ago
- SURPI☆86May 10, 2016Updated 10 years ago
- full taxonomer cython repository☆22Dec 1, 2019Updated 6 years ago
- Interactively explore metagenomes and more from a web browser.☆502Dec 22, 2021Updated 4 years ago
- A metagenomic and isolate assembly and analysis pipeline built with AMOS☆92Nov 20, 2017Updated 8 years ago
- High throughput sequencing analysis tools☆30Apr 21, 2025Updated last year
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆359Jul 19, 2025Updated last year
- Fast genome and metagenome distance estimation using MinHash☆455Sep 19, 2025Updated last year
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Rapid large-scale prokaryote pan genome analysis☆380Nov 3, 2025Updated 11 months ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆75May 31, 2016Updated 10 years ago
- Rapid prokaryotic genome annotation☆995Jan 6, 2026Updated 9 months ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 5 years ago
- ☆25Feb 21, 2017Updated 9 years ago
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 3 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆390Apr 10, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆216Aug 21, 2024Updated 2 years ago
- hybrid assembly pipeline for bacterial genomes☆655Jul 29, 2026Updated 2 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆303May 9, 2024Updated 2 years ago
- Rapid haploid variant calling and core genome alignment☆595Dec 12, 2025Updated 10 months ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆38Oct 1, 2026Updated 2 weeks ago
- Pan-genome wide association studies☆226May 29, 2024Updated 2 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Nov 30, 2020Updated 5 years ago
- ☆133Jul 9, 2023Updated 3 years ago
- Mummer alignment tool☆576Feb 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Ultra-efficient taxonomic mapping of NGS data☆51Mar 26, 2021Updated 5 years ago
- A single molecule sequence assembler for genomes large and small.☆708Sep 10, 2026Updated last month
- Ultra-fast and memory-efficient (meta-)genome assembler☆725Oct 28, 2025Updated 11 months ago
- A fast multi-threaded k-mer counter☆553Mar 20, 2024Updated 2 years ago
- ☆53May 11, 2021Updated 5 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 7 months ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Sep 8, 2026Updated last month