DerrickWood / kraken
Kraken taxonomic sequence classification system
☆214Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for kraken
- A tool for generating consensus long-read assemblies for bacterial genomes☆308Updated 5 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆341Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆272Updated 6 months ago
- A tool to circularize genome assemblies☆233Updated 7 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆294Updated 4 months ago
- Rapid large-scale prokaryote pan genome analysis☆324Updated 2 years ago
- Classifier for metagenomic sequences☆250Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆213Updated 3 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆214Updated last year
- Synteny and Rearrangement Identifier☆344Updated 3 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆348Updated 2 months ago
- Assembly and binning of metagenomes☆217Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆287Updated this week
- Genome Assembly and Annotation Service code☆202Updated 11 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆272Updated 3 weeks ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆178Updated 2 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆178Updated 9 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆171Updated 3 years ago
- Scan contig files against PubMLST typing schemes☆201Updated 2 years ago
- quality filtering tool for long reads☆292Updated last year
- An overview of all nanopack tools☆214Updated last year
- Bacterial ribosomal RNA predictor☆227Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆224Updated 10 months ago
- ☆246Updated 3 weeks ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆125Updated 2 weeks ago
- Short Read Sequence Typing for Bacterial Pathogens☆125Updated 3 years ago
- "Reads to report" for public health and clinical microbiology☆136Updated 8 months ago
- Read trimming tool for Illumina NGS data.☆128Updated 9 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆242Updated 2 weeks ago
- BSR-Based Allele Calling Algorithm☆134Updated 2 weeks ago