DerrickWood / krakenLinks
Kraken taxonomic sequence classification system
☆219Updated 4 years ago
Alternatives and similar repositories for kraken
Users that are interested in kraken are comparing it to the libraries listed below
Sorting:
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆241Updated last year
- A tool to circularize genome assemblies☆250Updated last year
- Quality control for MinION sequencing data☆217Updated 2 years ago
- Classifier for metagenomic sequences☆269Updated 6 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆298Updated 8 months ago
- a toolkit for working with Oxford nanopore data☆244Updated 2 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆332Updated 10 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- ☆131Updated 2 years ago
- Finds SNP sites from a multi-FASTA alignment file☆272Updated 5 years ago
- Bacterial ribosomal RNA predictor☆267Updated last week
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆247Updated 3 weeks ago
- Filtering and trimming of long read sequencing data☆211Updated 2 years ago
- Antimicrobial Resistance Identification By Assembly☆182Updated 2 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆171Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆151Updated last month
- Pilon is an automated genome assembly improvement and variant detection tool☆373Updated 3 years ago
- Short Read Sequence Typing for Bacterial Pathogens☆145Updated 4 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- A robust, extensible metagenomics pipeline☆174Updated this week
- Efficient phylogenomic software by maximum likelihood☆203Updated 4 years ago
- Windowed Adaptive Trimming for fastq files using quality☆226Updated 8 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆293Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆339Updated 3 months ago
- Read trimming tool for Illumina NGS data.☆148Updated 10 years ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆282Updated 4 months ago