DerrickWood / krakenLinks
Kraken taxonomic sequence classification system
โ217Updated 3 years ago
Alternatives and similar repositories for kraken
Users that are interested in kraken are comparing it to the libraries listed below
Sorting:
- A tool to circularize genome assembliesโ247Updated last year
- ๐ KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific resultsโ237Updated last year
- Quality control for MinION sequencing dataโ217Updated 2 years ago
- Classifier for metagenomic sequencesโ265Updated 2 months ago
- Finds SNP sites from a multi-FASTA alignment fileโ266Updated 4 years ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species iโฆโ319Updated 6 months ago
- โกโ ๏ธ Assemble bacterial isolate genomes from Illumina paired-end readsโ235Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomesโ332Updated last year
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference databaseโ290Updated 4 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.โ239Updated 4 years ago
- Bacterial ribosomal RNA predictorโ252Updated last year
- โ131Updated 2 years ago
- ARTIC nanopore protocol for nCoV2019 novel coronavirusโ170Updated 2 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies bโฆโ284Updated 10 months ago
- Convert various sequence formats to FASTAโ138Updated 3 years ago
- a toolkit for working with Oxford nanopore dataโ246Updated 2 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasetsโ204Updated last year
- Short Read Sequence Typing for Bacterial Pathogensโ138Updated 4 years ago
- Read trimming tool for Illumina NGS data.โ142Updated 10 years ago
- a signal-level demultiplexer for Oxford Nanopore readsโ126Updated 4 years ago
- Assembly and intrahost/low-frequency variant calling for viral samplesโ142Updated this week
- Benchmarking of long-read assembly tools for bacterial whole genomesโ173Updated 4 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbinsโ200Updated last week
- A robust, extensible metagenomics pipelineโ174Updated last week
- Antimicrobial Resistance Identification By Assemblyโ180Updated last year
- Pilon is an automated genome assembly improvement and variant detection toolโ368Updated 3 years ago
- Genome Assembly and Annotation Service codeโ214Updated last year
- โ260Updated 2 months ago
- Filtering and trimming of long read sequencing dataโ208Updated 2 years ago
- An overview of all nanopack toolsโ267Updated 2 years ago