DerrickWood / krakenLinks
Kraken taxonomic sequence classification system
☆217Updated 3 years ago
Alternatives and similar repositories for kraken
Users that are interested in kraken are comparing it to the libraries listed below
Sorting:
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆235Updated last year
- A tool to circularize genome assemblies☆245Updated last year
- Quality control for MinION sequencing data☆217Updated 2 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆287Updated 3 months ago
- a toolkit for working with Oxford nanopore data☆245Updated 2 years ago
- Classifier for metagenomic sequences☆261Updated last month
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆231Updated 2 years ago
- An overview of all nanopack tools☆265Updated 2 years ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆316Updated 5 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- Finds SNP sites from a multi-FASTA alignment file☆264Updated 4 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆329Updated last year
- Short Read Sequence Typing for Bacterial Pathogens☆137Updated 4 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆198Updated 4 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆203Updated 11 months ago
- ☆129Updated 2 years ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆139Updated last month
- "Reads to report" for public health and clinical microbiology☆141Updated last year
- Convert various sequence formats to FASTA☆138Updated 3 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Updated 4 years ago
- Bacterial ribosomal RNA predictor☆249Updated last year
- BSR-Based Allele Calling Algorithm☆149Updated last week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 9 months ago
- ☆257Updated last month
- Fast genome analysis from unassembled short reads☆295Updated last year
- Read trimming tool for Illumina NGS data.☆140Updated 10 years ago
- Antimicrobial Resistance Identification By Assembly☆179Updated last year