š KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
ā252Jan 18, 2024Updated 2 years ago
Alternatives and similar repositories for krakenuniq
Users that are interested in krakenuniq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- š Interactive analysis of metagenomics dataā454Sep 17, 2025Updated 10 months ago
- Bonsai: Fast, flexible taxonomic analysis and classificationā70Apr 9, 2024Updated 2 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output filesā382Aug 1, 2025Updated 11 months ago
- Classifier for metagenomic sequencesā278Apr 15, 2026Updated 3 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species iā¦ā357Mar 16, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer ⢠AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- hybrid assembly pipeline for bacterial genomesā648Updated this week
- The second version of the Kraken taxonomic sequence classification systemā924Updated this week
- Antimicrobial Resistance Identification By Assemblyā186Oct 12, 2023Updated 2 years ago
- A tool to circularize genome assembliesā257Apr 6, 2024Updated 2 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.ā259May 13, 2026Updated 2 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searchingā219Apr 24, 2026Updated 3 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.ā553Updated this week
- Fast genome and metagenome distance estimation using MinHashā448Sep 19, 2025Updated 10 months ago
- Kraken taxonomic sequence classification systemā227Sep 27, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer ⢠AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Interactively explore metagenomes and more from a web browser.ā503Dec 22, 2021Updated 4 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference databaseā304Jun 9, 2026Updated last month
- Mass screening of contigs for antimicrobial and virulence genesā502Jul 17, 2026Updated last week
- Reorients assembled microbial sequencesā143Jun 30, 2026Updated 3 weeks ago
- Rapid haploid variant calling and core genome alignmentā594Dec 12, 2025Updated 7 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmidsā664Jul 10, 2026Updated 2 weeks ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS dataā124Aug 24, 2023Updated 2 years ago
- Genomic neighbor typing of bacterial pathogens using MinHashā42Jan 10, 2023Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomesā345Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits ⢠AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Fast Whole-Genome Similarity (ANI) Estimationā474Dec 16, 2025Updated 7 months ago
- SKESA assemblerā126Oct 11, 2024Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing dataā174Sep 4, 2025Updated 10 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)ā2,401Jul 10, 2026Updated 2 weeks ago
- a short-read polishing tool for long-read assembliesā219Updated this week
- Scalable creating/updating of metagenome profiling databasesā62Jun 25, 2025Updated last year
- reference-based long read assemblies of bacterial genomesā52Aug 9, 2021Updated 4 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easilyā672Jul 7, 2026Updated 3 weeks ago
- Pan-genome inference and genotyping with long noisy or short accurate readsā119Dec 13, 2024Updated last year
- End-to-end encrypted email - Proton Mail ⢠AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ā84Sep 13, 2023Updated 2 years ago
- An updated pipeline for pangenome investigationā367Jul 2, 2026Updated 3 weeks ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.ā616May 20, 2026Updated 2 months ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomicsā103Feb 10, 2026Updated 5 months ago
- A resistome profiler for Graphing Resistance Out Of meTagenomesā65May 11, 2020Updated 6 years ago
- Create a tree using Mash distancesā188Oct 24, 2023Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomesā234Updated this week