š KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
ā253Jan 18, 2024Updated 2 years ago
Alternatives and similar repositories for krakenuniq
Users that are interested in krakenuniq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- š Interactive analysis of metagenomics dataā455Sep 17, 2025Updated last year
- Bonsai: Fast, flexible taxonomic analysis and classificationā70Apr 9, 2024Updated 2 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output filesā384Aug 1, 2025Updated last year
- Classifier for metagenomic sequencesā281Apr 15, 2026Updated 5 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species iā¦ā359Mar 16, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways ⢠AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- hybrid assembly pipeline for bacterial genomesā653Jul 29, 2026Updated last month
- The second version of the Kraken taxonomic sequence classification systemā941Updated this week
- Antimicrobial Resistance Identification By Assemblyā187Oct 12, 2023Updated 2 years ago
- A tool to circularize genome assembliesā259Apr 6, 2024Updated 2 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.ā264May 13, 2026Updated 4 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searchingā222Apr 24, 2026Updated 5 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.ā557Updated this week
- Fast genome and metagenome distance estimation using MinHashā453Sep 19, 2025Updated last year
- Kraken taxonomic sequence classification systemā228Sep 27, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer ⢠AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Interactively explore metagenomes and more from a web browser.ā504Dec 22, 2021Updated 4 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference databaseā307Sep 17, 2026Updated last week
- Mass screening of contigs for antimicrobial and virulence genesā512Jul 17, 2026Updated 2 months ago
- Reorients assembled microbial sequencesā146Jun 30, 2026Updated 2 months ago
- Rapid haploid variant calling and core genome alignmentā594Dec 12, 2025Updated 9 months ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS dataā124Aug 24, 2023Updated 3 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmidsā682Aug 7, 2026Updated last month
- Genomic neighbor typing of bacterial pathogens using MinHashā42Jan 10, 2023Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomesā349Jul 24, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI ⢠AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Fast Whole-Genome Similarity (ANI) Estimationā482Sep 14, 2026Updated 2 weeks ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing dataā176Sep 4, 2025Updated last year
- SKESA assemblerā128Oct 11, 2024Updated last year
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)ā2,432Sep 10, 2026Updated 2 weeks ago
- a short-read polishing tool for long-read assembliesā226Jul 28, 2026Updated 2 months ago
- Scalable creating/updating of metagenome profiling databasesā62Jun 25, 2025Updated last year
- reference-based long read assemblies of bacterial genomesā52Aug 9, 2021Updated 5 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easilyā680Jul 7, 2026Updated 2 months ago
- Pan-genome inference and genotyping with long noisy or short accurate readsā120Dec 13, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer ⢠AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ā85Sep 13, 2023Updated 3 years ago
- An updated pipeline for pangenome investigationā377Jul 2, 2026Updated 2 months ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomicsā105Aug 2, 2026Updated last month
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.ā622Updated this week
- A resistome profiler for Graphing Resistance Out Of meTagenomesā65Sep 15, 2026Updated last week
- Create a tree using Mash distancesā190Oct 24, 2023Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomesā240Sep 17, 2026Updated last week