fbreitwieser / krakenuniqLinks
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
☆241Updated last year
Alternatives and similar repositories for krakenuniq
Users that are interested in krakenuniq are comparing it to the libraries listed below
Sorting:
- A tool to circularize genome assemblies☆249Updated last year
- Quality control for MinION sequencing data☆217Updated 2 years ago
- Filtering and trimming of long read sequencing data☆209Updated 2 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- Classifier for metagenomic sequences☆267Updated 5 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆332Updated 8 months ago
- Bacterial ribosomal RNA predictor☆262Updated this week
- SortMeRNA: next-generation sequence filtering and alignment tool☆280Updated 3 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆285Updated this week
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- ☆220Updated last week
- ☆270Updated 5 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 4 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆335Updated 3 months ago
- ☆222Updated 10 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆145Updated this week
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Updated 3 years ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆196Updated 2 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆242Updated last year
- A robust, extensible metagenomics pipeline☆174Updated this week
- Genome Assembly and Annotation Service code☆216Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- Fast genome analysis from unassembled short reads☆300Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆230Updated last year
- Fast and accurately polish the genome generated by long reads.☆238Updated 11 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆283Updated this week
- Read trimming tool for Illumina NGS data.☆148Updated 10 years ago