fbreitwieser / krakenuniq
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
☆229Updated last year
Alternatives and similar repositories for krakenuniq:
Users that are interested in krakenuniq are comparing it to the libraries listed below
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆274Updated 4 months ago
- A tool to circularize genome assemblies☆236Updated 10 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆314Updated 8 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆347Updated 2 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆218Updated 6 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆242Updated 3 months ago
- Fast and accurately polish the genome generated by long reads.☆217Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆296Updated last week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆157Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆203Updated 3 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆141Updated last year
- Bacterial ribosomal RNA predictor☆234Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆135Updated 3 years ago
- Filtering and trimming of long read sequencing data☆198Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆202Updated 2 years ago
- De-Novo Repeat Discovery Tool☆200Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆195Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆211Updated 7 months ago
- Fast genome analysis from unassembled short reads☆279Updated 10 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆197Updated 6 months ago
- Genome Assembly and Annotation Service code☆207Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆261Updated 2 weeks ago
- An overview of all nanopack tools☆233Updated last year
- Assembly and intrahost/low-frequency variant calling for viral samples☆131Updated 3 weeks ago
- ☆198Updated 3 weeks ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- Quality control for MinION sequencing data☆216Updated 2 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆296Updated 11 months ago
- The ARTIC field bioinformatics pipeline☆120Updated last week
- A minimap2 frontend for PacBio native data formats☆181Updated 2 months ago