š KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
ā248Jan 18, 2024Updated 2 years ago
Alternatives and similar repositories for krakenuniq
Users that are interested in krakenuniq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- š Interactive analysis of metagenomics dataā452Sep 17, 2025Updated 8 months ago
- Bonsai: Fast, flexible taxonomic analysis and classificationā70Apr 9, 2024Updated 2 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output filesā374Aug 1, 2025Updated 9 months ago
- Classifier for metagenomic sequencesā274Apr 15, 2026Updated last month
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species iā¦ā350Mar 16, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient ā¢ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- hybrid assembly pipeline for bacterial genomesā642Jul 25, 2024Updated last year
- The second version of the Kraken taxonomic sequence classification systemā908May 14, 2026Updated 2 weeks ago
- Antimicrobial Resistance Identification By Assemblyā187Oct 12, 2023Updated 2 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.ā252May 13, 2026Updated 2 weeks ago
- A tool to circularize genome assembliesā257Apr 6, 2024Updated 2 years ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searchingā217Apr 24, 2026Updated last month
- Quickly search, compare, and analyze genomic and metagenomic data sets.ā542May 21, 2026Updated last week
- Fast genome and metagenome distance estimation using MinHashā443Sep 19, 2025Updated 8 months ago
- Interactively explore metagenomes and more from a web browser.ā501Dec 22, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI ā¢ AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Kraken taxonomic sequence classification systemā226Sep 27, 2021Updated 4 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference databaseā302Apr 25, 2025Updated last year
- Mass screening of contigs for antimicrobial and virulence genesā493Apr 3, 2026Updated last month
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS dataā124Aug 24, 2023Updated 2 years ago
- Reorients assembled microbial sequencesā137Aug 21, 2025Updated 9 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmidsā643May 15, 2026Updated 2 weeks ago
- Genomic neighbor typing of bacterial pathogens using MinHashā42Jan 10, 2023Updated 3 years ago
- Rapid haploid variant calling and core genome alignmentā585Dec 12, 2025Updated 5 months ago
- A tool for generating consensus long-read assemblies for bacterial genomesā344Sep 11, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI ā¢ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SKESA assemblerā126Oct 11, 2024Updated last year
- Fast Whole-Genome Similarity (ANI) Estimationā461Dec 16, 2025Updated 5 months ago
- a short-read polishing tool for long-read assembliesā218Sep 19, 2025Updated 8 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing dataā170Sep 4, 2025Updated 8 months ago
- Scalable creating/updating of metagenome profiling databasesā62Jun 25, 2025Updated 11 months ago
- Pan-genome inference and genotyping with long noisy or short accurate readsā118Dec 13, 2024Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easilyā672Dec 3, 2022Updated 3 years ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)ā2,366Apr 24, 2026Updated last month
- An updated pipeline for pangenome investigationā360May 13, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient ā¢ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.ā599May 20, 2026Updated last week
- reference-based long read assemblies of bacterial genomesā52Aug 9, 2021Updated 4 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomicsā102Feb 10, 2026Updated 3 months ago
- A resistome profiler for Graphing Resistance Out Of meTagenomesā66May 11, 2020Updated 6 years ago
- Split Kmer Analysisā66May 26, 2022Updated 4 years ago
- Create a tree using Mash distancesā188Oct 24, 2023Updated 2 years ago
- Metagenomic profiling and phylogenetic distances via common kmersā42Jul 12, 2021Updated 4 years ago