fbreitwieser / krakenuniq
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
☆232Updated last year
Alternatives and similar repositories for krakenuniq:
Users that are interested in krakenuniq are comparing it to the libraries listed below
- A tool to circularize genome assemblies☆241Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆201Updated 8 months ago
- Bacterial ribosomal RNA predictor☆242Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆303Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆137Updated 3 years ago
- Filtering and trimming of long read sequencing data☆205Updated 2 years ago
- Genome Assembly and Annotation Service code☆211Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆277Updated 6 months ago
- quality filtering tool for long reads☆329Updated last year
- Quality control for MinION sequencing data☆217Updated 2 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆225Updated 8 months ago
- Classifier for metagenomic sequences☆258Updated 6 months ago
- Fast and accurately polish the genome generated by long reads.☆222Updated 3 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆361Updated 3 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆161Updated last year
- A minimap2 frontend for PacBio native data formats☆192Updated 2 months ago
- Nanopore data assembler☆151Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆320Updated 11 months ago
- Fast genome analysis from unassembled short reads☆289Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆145Updated last week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆149Updated 2 years ago
- "Reads to report" for public health and clinical microbiology☆139Updated last year
- ☆186Updated 2 weeks ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆212Updated 3 weeks ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆251Updated last week
- Pan-genome wide association studies☆193Updated 11 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆299Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆268Updated 3 months ago