Alternatives and similar repositories for sunbeam:

Users that are interested in sunbeam are comparing it to the libraries listed below

• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆206Updated 4 months ago
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆134Updated 2 years ago
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆143Updated this week
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆300Updated last week
• tseemann / nullarbor
  "Reads to report" for public health and clinical microbiology
  ☆139Updated last year
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆199Updated 7 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆137Updated 3 years ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆239Updated last year
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆138Updated last year
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆221Updated last month
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆113Updated last month
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆210Updated last week
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆193Updated 10 months ago
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…
  ☆160Updated this week
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆318Updated 10 months ago
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆121Updated 7 months ago
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆192Updated 7 months ago
• wdecoster / chopper
  ☆183Updated 3 weeks ago
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆141Updated last month
• fbreitwieser / krakenuniq
  🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
  ☆231Updated last year
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆357Updated 3 years ago
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆221Updated 2 years ago
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆157Updated 2 months ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆170Updated 4 years ago
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated last year
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆160Updated last year
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆144Updated 3 weeks ago
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆110Updated 2 months ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆240Updated last year
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆220Updated 3 months ago