A robust, extensible metagenomics pipeline
β177Sep 21, 2026Updated this week
Alternatives and similar repositories for sunbeam
Users that are interested in sunbeam are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ATLAS - Three commands to start analyzing your metagenome dataβ406May 28, 2026Updated 3 months ago
- π Interactive analysis of metagenomics dataβ455Sep 17, 2025Updated last year
- A complete pipeline for metagenomic analysisβ454Aug 28, 2026Updated 3 weeks ago
- A method of assessing sequence complexity based on kmer frequenciesβ33Apr 9, 2018Updated 8 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic dataβ135Oct 6, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Classifier for metagenomic sequencesβ281Apr 15, 2026Updated 5 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysisβ477Updated this week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.β622Updated this week
- A gene-targeted assembler toolβ19Oct 27, 2017Updated 8 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference databaseβ307Sep 17, 2026Updated last week
- De novo Extraction of Strains from MetAgeNomesβ72Jun 17, 2020Updated 6 years ago
- π KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific resultsβ253Jan 18, 2024Updated 2 years ago
- DAS Toolβ177May 2, 2024Updated 2 years ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.β557Updated this week
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Read alignment statistics for metagenomicsβ407Updated this week
- Antimicrobial Resistance Identification By Assemblyβ187Oct 12, 2023Updated 2 years ago
- An analysis and visualization platform for 'omics dataβ536Updated this week
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomicsβ211Updated this week
- hybrid assembly pipeline for bacterial genomesβ653Jul 29, 2026Updated last month
- YAMP: Yet Another Metagenomic Pipelineβ62Jun 5, 2023Updated 3 years ago
- MAG Circularization Methodβ33Nov 4, 2025Updated 10 months ago
- Histosketching Using Little Kmersβ56May 25, 2023Updated 3 years ago
- β133Jul 9, 2023Updated 3 years ago
- Open source password manager - Proton Pass β’ AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A Shotgun Metagenome Annotation Pipelineβ24Mar 24, 2017Updated 9 years ago
- MiGA: Microbial Genomes Atlasβ33Aug 7, 2026Updated last month
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing dataβ176Sep 4, 2025Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profilingβ187Jul 17, 2026Updated 2 months ago
- Workshop materials for shotgun metagenomicsβ38Jul 17, 2017Updated 9 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metageβ¦β236Updated this week
- in silico plasmid extractionβ13Sep 18, 2017Updated 9 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.β465Feb 13, 2026Updated 7 months ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learningβ107Sep 17, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinicalβ¦β44Nov 20, 2019Updated 6 years ago
- Rapid comparison and dereplication of genomesβ357Sep 4, 2026Updated 3 weeks ago
- Interactive tools for metagenome visualization and binning in Rβ27Jun 28, 2018Updated 8 years ago
- Metagenomic binning suiteβ29Sep 30, 2022Updated 3 years ago
- Dadaist2 π¨ Highway to Rβ13Mar 7, 2025Updated last year
- Rapid large-scale prokaryote pan genome analysisβ380Nov 3, 2025Updated 10 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on hβ¦β434Updated this week