Alternatives and similar repositories for sunbeam

Users that are interested in sunbeam are comparing it to the libraries listed below

• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆143Updated 2 years ago
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆147Updated last month
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated 8 months ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆225Updated last week
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆134Updated last year
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆166Updated 3 weeks ago
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆150Updated 10 months ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆209Updated last year
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…
  ☆178Updated 2 months ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆170Updated 4 years ago
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆168Updated 2 months ago
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆126Updated 5 years ago
• mjsull / Easyfig
  Development version of Easyfig
  ☆104Updated 2 years ago
• CSB5 / OPERA-MS
  OPERA-MS - Hybrid Metagenomic Assembler
  ☆99Updated last year
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆142Updated 6 months ago
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆177Updated last week
• fbreitwieser / krakenuniq
  🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
  ☆243Updated 2 years ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆125Updated 2 weeks ago
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆66Updated 2 years ago
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆148Updated last week
• tseemann / nullarbor
  "Reads to report" for public health and clinical microbiology
  ☆143Updated 2 months ago
• khyox / recentrifuge
  Recentrifuge: robust comparative analysis and contamination removal for metagenomics
  ☆99Updated last month
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆151Updated last month
• jameshadfield / phandango
  an interactive viewer for populations of bacterial genomes linked by a phylogeny
  ☆131Updated last year
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆92Updated 7 months ago
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆199Updated last week
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆252Updated last year
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆129Updated 3 months ago
• Mykrobe-tools / mykrobe
  Antibiotic resistance prediction in minutes
  ☆114Updated last year
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆67Updated 2 years ago