A robust, extensible metagenomics pipeline
β177Oct 5, 2026Updated last week
Alternatives and similar repositories for sunbeam
Users that are interested in sunbeam are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ATLAS - Three commands to start analyzing your metagenome dataβ405May 28, 2026Updated 4 months ago
- π Interactive analysis of metagenomics dataβ455Sep 17, 2025Updated last year
- A complete pipeline for metagenomic analysisβ453Aug 28, 2026Updated last month
- A method of assessing sequence complexity based on kmer frequenciesβ33Apr 9, 2018Updated 8 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic dataβ134Oct 6, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Classifier for metagenomic sequencesβ281Apr 15, 2026Updated 6 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysisβ478Updated this week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.β622Updated this week
- A gene-targeted assembler toolβ19Oct 27, 2017Updated 8 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference databaseβ307Sep 17, 2026Updated 3 weeks ago
- De novo Extraction of Strains from MetAgeNomesβ72Jun 17, 2020Updated 6 years ago
- π KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific resultsβ249Jan 18, 2024Updated 2 years ago
- DAS Toolβ177Updated this week
- Quickly search, compare, and analyze genomic and metagenomic data sets.β557Updated this week
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Read alignment statistics for metagenomicsβ406Sep 23, 2026Updated 3 weeks ago
- Antimicrobial Resistance Identification By Assemblyβ187Oct 12, 2023Updated 3 years ago
- An analysis and visualization platform for 'omics dataβ543Oct 9, 2026Updated last week
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomicsβ211Sep 22, 2026Updated 3 weeks ago
- hybrid assembly pipeline for bacterial genomesβ655Jul 29, 2026Updated 2 months ago
- YAMP: Yet Another Metagenomic Pipelineβ62Jun 5, 2023Updated 3 years ago
- MAG Circularization Methodβ33Nov 4, 2025Updated 11 months ago
- Histosketching Using Little Kmersβ56May 25, 2023Updated 3 years ago
- β133Jul 9, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Shotgun Metagenome Annotation Pipelineβ24Mar 24, 2017Updated 9 years ago
- MiGA: Microbial Genomes Atlasβ33Aug 7, 2026Updated 2 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing dataβ175Sep 4, 2025Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profilingβ186Jul 17, 2026Updated 2 months ago
- Workshop materials for shotgun metagenomicsβ38Jul 17, 2017Updated 9 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metageβ¦β236Oct 9, 2026Updated last week
- in silico plasmid extractionβ13Sep 18, 2017Updated 9 years ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.β467Feb 13, 2026Updated 8 months ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinicalβ¦β45Nov 20, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off β’ AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- DeepMicrobes: taxonomic classification for metagenomics with deep learningβ106Sep 17, 2022Updated 4 years ago
- Rapid comparison and dereplication of genomesβ359Updated this week
- Interactive tools for metagenome visualization and binning in Rβ27Jun 28, 2018Updated 8 years ago
- Metagenomic binning suiteβ29Sep 30, 2022Updated 4 years ago
- Dadaist2 π¨ Highway to Rβ13Mar 7, 2025Updated last year
- Rapid large-scale prokaryote pan genome analysisβ380Nov 3, 2025Updated 11 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on hβ¦β434Updated this week