sunbeam-labs / sunbeamLinks
A robust, extensible metagenomics pipeline
☆174Updated last week
Alternatives and similar repositories for sunbeam
Users that are interested in sunbeam are comparing it to the libraries listed below
Sorting:
- Processing pipeline for pan-genome visulization and exploration☆141Updated last year
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 2 months ago
- A user-friendly workflow for phylogenomics☆219Updated 3 weeks ago
- Convert various sequence formats to FASTA☆138Updated 3 years ago
- Metatranscriptomics Tutorial☆63Updated 2 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆117Updated 2 months ago
- Pan-genome wide association studies☆202Updated last year
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- Download files from NCBI Entrez by accession☆127Updated 11 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆208Updated last year
- Assembly and intrahost/low-frequency variant calling for viral samples☆140Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated last month
- Pipeline for metabolic annotation of microbial genomes☆150Updated 5 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆204Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆157Updated last year
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆193Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆219Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆244Updated last month
- A package for designing compact and comprehensive capture probe sets.☆89Updated last year
- A tool to circularize genome assemblies☆247Updated last year
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆161Updated last week
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆162Updated 2 years ago
- BSR-Based Allele Calling Algorithm☆149Updated 3 weeks ago
- Bioinformatics Tools☆89Updated this week
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆154Updated 2 months ago
- Bioinformatics program inStrain☆174Updated 3 months ago
- CAMISIM: Simulating metagenomes and microbial communities☆214Updated last month
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆118Updated 2 months ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…☆167Updated last month