Alternatives and similar repositories for KEMET

Users that are interested in KEMET are comparing it to the libraries listed below

• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆52Updated last year
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆46Updated 2 months ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆40Updated 3 years ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆45Updated 4 months ago
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆41Updated last year
• EBI-Metagenomics / genome_uploader
  Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
  ☆25Updated 2 weeks ago
• LottePronk / whokaryote
  Classify metagenomic contigs as eukaryotic or prokaryotic
  ☆43Updated 2 years ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆29Updated last year
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆22Updated 2 years ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆70Updated this week
• AlexanderLabWHOI / EukHeist
  ☆26Updated 2 years ago
• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆29Updated 7 months ago
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆21Updated 2 years ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆51Updated 2 months ago
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆35Updated 2 years ago
• allind / EukDetect
  ☆54Updated 5 months ago
• Wanli-HE / Plaspline
  ☆20Updated 2 years ago
• lauriebelch / SOCfinder
  ☆16Updated 7 months ago
• danielpodlesny / samestr
  SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
  ☆24Updated last month
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆29Updated 9 months ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆54Updated 5 years ago
• wandreopoulos / deeplasmid
  ☆20Updated last year
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆46Updated 8 months ago
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆22Updated last year
• ziyewang / MetaBinner
  ☆61Updated last year
• lmlui / Jorg
  MAG Circularization Method
  ☆32Updated last month
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆32Updated 3 weeks ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆35Updated 8 months ago
• xthua / bacant
  This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
  ☆21Updated 2 years ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆25Updated last year