chengsly / DeepMicroClassLinks
☆30Updated 6 months ago
Alternatives and similar repositories for DeepMicroClass
Users that are interested in DeepMicroClass are comparing it to the libraries listed below
Sorting:
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆60Updated 3 years ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆74Updated 2 months ago
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 4 months ago
- ☆53Updated last month
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 3 months ago
- Tools to analyze the differences and similarities between CRISPR arrays☆11Updated 8 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 weeks ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆76Updated 8 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆48Updated 4 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆73Updated 2 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆46Updated 2 years ago
- code repo for mobileOG-db☆40Updated 3 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆74Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆12Updated 9 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆57Updated 5 months ago
- The viral taxonomic assignment pipeline☆27Updated 5 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆70Updated 4 years ago
- Find endogenous viral elements in genomes☆16Updated 2 months ago
- ☆27Updated last year
- ☆25Updated 6 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- ☆57Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated 2 months ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆96Updated last month