☆35May 20, 2026Updated last month
Alternatives and similar repositories for DeepMicroClass
Users that are interested in DeepMicroClass are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆14May 17, 2026Updated last month
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 4 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 5 months ago
- MAG Circularization Method☆33Nov 4, 2025Updated 7 months ago
- tiara – a tool for DNA sequence classification☆85Mar 2, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆64Feb 27, 2024Updated 2 years ago
- Microbiome classification pipeline☆67May 13, 2025Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- ☆61May 11, 2026Updated last month
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆130May 28, 2026Updated last month
- Binning Virus Genomes from Metagenomes☆75Jul 13, 2022Updated 3 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆293Nov 28, 2024Updated last year
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆68May 9, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- ☆77Mar 10, 2024Updated 2 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- ☆11Nov 17, 2020Updated 5 years ago
- ☆27Jun 20, 2023Updated 3 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆81Jun 17, 2024Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆60May 24, 2026Updated last month
- ☆17May 26, 2022Updated 4 years ago
- ☆27May 17, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Gmove is a gene prediction tool☆21Oct 9, 2024Updated last year
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆16Dec 20, 2024Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- ☆34Oct 6, 2025Updated 8 months ago
- An algorithm for clustering metagenomic sequences.☆42Dec 12, 2025Updated 6 months ago
- Autometa: Automated Extraction of Genomes from Shotgun Metagenomes☆45Jan 24, 2025Updated last year
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Dec 30, 2025Updated 5 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆164Jun 7, 2026Updated 3 weeks ago
- Tool to estimate genome quality of microbial eukaryotes☆44Aug 1, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Identifying viruses from metagenomic data by deep learning☆154May 5, 2026Updated last month
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆56Sep 17, 2024Updated last year
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆16Aug 28, 2024Updated last year
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆17Mar 5, 2026Updated 3 months ago
- A tool for computing the coding potential of RNA transcript sequences using deep learning classification model☆56Oct 11, 2022Updated 3 years ago