☆57Sep 17, 2026Updated last month
Alternatives and similar repositories for gRodon2
Users that are interested in gRodon2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Estimating maximum growth rates of bacteria from genomic data with Phydon.☆10Sep 18, 2025Updated last year
- ☆53May 29, 2026Updated 5 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆20Aug 7, 2026Updated 3 months ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆21May 11, 2022Updated 4 years ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆22Mar 17, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆73Mar 16, 2026Updated 7 months ago
- ☆65Feb 27, 2024Updated 2 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated last year
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆236Mar 24, 2026Updated 7 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆76Dec 28, 2019Updated 6 years ago
- Binning Virus Genomes from Metagenomes☆78Jul 13, 2022Updated 4 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆45Sep 3, 2024Updated 2 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆344Oct 29, 2026Updated last week
- geNomad: Identification of mobile genetic elements☆342Oct 14, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Metagenomic Binning Algorithm☆56Updated this week
- ☆14Sep 2, 2021Updated 5 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆38Oct 31, 2026Updated last week
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 11 months ago
- ☆10Apr 8, 2025Updated last year
- Scripts for calculating features and regression of prokaryote OGT☆27Feb 13, 2024Updated 2 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- MICROPHERRET: MICRObial PHEnotypic tRait ClassifieR using machine lEarning Techniques☆15Oct 25, 2026Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆283Mar 20, 2025Updated last year
- ☆27Jun 20, 2023Updated 3 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆34Nov 2, 2025Updated last year
- IslandPath standalone software☆38Oct 7, 2026Updated 3 weeks ago
- SMETANA: a tool to analyse interactions in microbial communities☆79May 6, 2025Updated last year
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 8 months ago
- Repository for GreeningLab metabolic marker gene databases☆15May 28, 2026Updated 5 months ago
- ☆31Aug 2, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ⚡🦠🧬📇 Rapid microbial genomes-to-report pipeline☆75Oct 27, 2026Updated last week
- PaperBLAST: find papers about a protein or its homologs☆55Sep 8, 2026Updated last month
- ☆18Jun 5, 2026Updated 5 months ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated 2 years ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆98May 11, 2026Updated 5 months ago
- GEne Cluster prediction with COnditional random fields.☆91Jul 29, 2026Updated 3 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆190Mar 17, 2026Updated 7 months ago