jlw-ecoevo / gRodon2View external linksLinks
☆50Jan 4, 2026Updated last month
Alternatives and similar repositories for gRodon2
Users that are interested in gRodon2 are comparing it to the libraries listed below
Sorting:
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Jul 14, 2024Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆67Mar 28, 2025Updated 10 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 5 years ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆15Dec 20, 2024Updated last year
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 3 weeks ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Nov 2, 2025Updated 3 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Dec 28, 2019Updated 6 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆218Jan 27, 2025Updated last year
- ☆47Mar 13, 2024Updated last year
- KEGG Module Evaluation Tool☆32Nov 15, 2023Updated 2 years ago
- ☆17May 13, 2025Updated 9 months ago
- ☆14Sep 2, 2021Updated 4 years ago
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- ☆26Jun 20, 2023Updated 2 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated this week
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆33Jul 12, 2022Updated 3 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Apr 10, 2025Updated 10 months ago
- GEne Cluster prediction with COnditional random fields.☆79Jan 24, 2026Updated 3 weeks ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Feb 17, 2023Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆70Jul 13, 2022Updated 3 years ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆254Jul 27, 2024Updated last year
- Uncover organisms' metabolic blueprints☆13Jun 18, 2024Updated last year
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆18Mar 17, 2021Updated 4 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Sep 3, 2024Updated last year
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated 9 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Nov 14, 2025Updated 3 months ago
- ☆18Dec 2, 2022Updated 3 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆319Feb 3, 2026Updated last week
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 2 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆103Jun 25, 2023Updated 2 years ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆19May 11, 2022Updated 3 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Mar 13, 2025Updated 11 months ago
- PaperBLAST: find papers about a protein or its homologs☆51Jan 20, 2026Updated 3 weeks ago
- IslandPath standalone software☆35Nov 7, 2023Updated 2 years ago
- Predict AMPs in (meta)genomes and peptides☆89Nov 24, 2025Updated 2 months ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆66Mar 2, 2022Updated 3 years ago