Alternatives and similar repositories for gRodon2:

Users that are interested in gRodon2 are comparing it to the libraries listed below

• allind / EukDetect
  ☆49Updated 10 months ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆54Updated this week
• EBI-Metagenomics / EukCC
  Tool to estimate genome quality of microbial eukaryotes
  ☆36Updated last month
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆53Updated last week
• jlw-ecoevo / gRodon
  ☆17Updated 2 years ago
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆32Updated 4 years ago
• WatsonLab / MAGpy
  Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
  ☆62Updated last year
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆50Updated 4 years ago
• ZengJiaxiong / Phosphorus-cycling-database
  This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.
  ☆31Updated 2 years ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆38Updated 4 months ago
• metagenopolis / CroCoDeEL
  CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
  ☆22Updated this week
• ghoresh11 / twilight
  All scripts used for the analysis of the twilight of the pan-genome, and scripts available for others to apply similar analysis
  ☆14Updated 3 years ago
• Carrion-lab / bacLIFE
  ☆40Updated last week
• qichao1984 / NCyc
  ☆49Updated 4 years ago
• snayfach / MicrobeCensus
  MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
  ☆43Updated 4 years ago
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆58Updated this week
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 6 months ago
• patrickwest / EukRep_Pipeline
  ☆24Updated 6 years ago
• jcmcnch / eASV-pipeline-for-515Y-926R
  This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
  ☆31Updated last month
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆61Updated 2 years ago
• minoh0201 / MetaCompare
  MetaCompare
  ☆17Updated 11 months ago
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆20Updated last year
• KatariinaParnanen / MobileGeneticElementDatabase
  Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
  ☆46Updated 3 years ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆37Updated 4 months ago
• AlexanderLabWHOI / EukHeist
  ☆25Updated last year
• Gibbons-Lab / pipelines
  Pipelines used in the lab.
  ☆11Updated 4 months ago
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆52Updated 10 months ago
• eead-csic-compbio / metagenome_Pfam_score
  Protocol for finding informative protein families and then using them to score metagenomic sets.
  ☆9Updated 3 years ago
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆61Updated 4 months ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆48Updated 8 months ago