☆51Mar 29, 2026Updated this week
Alternatives and similar repositories for gRodon2
Users that are interested in gRodon2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Jul 14, 2024Updated last year
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆16Dec 20, 2024Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 5 years ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆18Mar 17, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆220Jan 27, 2025Updated last year
- ☆14Sep 2, 2021Updated 4 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆42Sep 3, 2024Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆74Dec 28, 2019Updated 6 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆68Mar 16, 2026Updated last week
- ☆18Dec 2, 2022Updated 3 years ago
- ☆49Mar 13, 2024Updated 2 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Nov 2, 2025Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆257Jul 27, 2024Updated last year
- IslandPath standalone software☆36Nov 7, 2023Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆72Jul 13, 2022Updated 3 years ago
- ☆17May 13, 2025Updated 10 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 3 weeks ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 2 months ago
- ☆25Jun 20, 2023Updated 2 years ago
- Uncover organisms' metabolic blueprints☆13Jun 18, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Predict AMPs in (meta)genomes and peptides☆91Nov 24, 2025Updated 4 months ago
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 3 weeks ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Feb 17, 2023Updated 3 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆325Mar 18, 2026Updated last week
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated 10 months ago
- PaperBLAST: find papers about a protein or its homologs☆51Mar 11, 2026Updated 2 weeks ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆104Jun 25, 2023Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- GEne Cluster prediction with COnditional random fields.☆82Mar 10, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆20May 22, 2020Updated 5 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆35Jul 12, 2022Updated 3 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- SMETANA: a tool to analyse interactions in microbial communities☆67May 6, 2025Updated 10 months ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Codon Usage Analysis and Prediction of Gene Expressivity☆23Jan 2, 2019Updated 7 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated 6 months ago