Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data
☆17Dec 20, 2024Updated last year
Alternatives and similar repositories for AGS-and-ACN-tools
Users that are interested in AGS-and-ACN-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is an R package for element cycle analysis using metagenomic data.☆50Feb 2, 2026Updated 9 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆39Jul 12, 2022Updated 4 years ago
- ☆53May 29, 2026Updated 5 months ago
- Fast implementation of HMMSEARCH optimized for high-memory systems using PyHMMER☆12Jan 13, 2026Updated 9 months ago
- BiG-MEx implementation as Docker images and R packages☆13Feb 9, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆16Oct 19, 2026Updated 2 weeks ago
- Fast and robust identificaiton of antibiotic resistance genes (ARGs) from microbial genomes and metagenome assemblies using ARGfams, a hi…☆11Dec 30, 2022Updated 3 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆55Aug 16, 2021Updated 5 years ago
- Microbiome Data Simulator☆11Jul 11, 2025Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆22Mar 17, 2021Updated 5 years ago
- ☆19Nov 26, 2020Updated 5 years ago
- Metagenomic Markov Models for Antimicrobial Resistance Characterization - Source code☆11Jun 25, 2019Updated 7 years ago
- ☆19Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆50Apr 14, 2020Updated 6 years ago
- Horizontal gene transfer (HGT) identification pipeline☆74May 17, 2023Updated 3 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 16, 2026Updated 4 months ago
- Apply AI-based trait prediction from BacDive to your own genomes.☆16Nov 12, 2024Updated last year
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- ☆64Dec 30, 2020Updated 5 years ago
- Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategies☆21Feb 18, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆57Sep 17, 2026Updated last month
- Metapresence is a Python tool to calculate metrics to assess the evenness of the coverage distribution on DNA sequences, in order to infe…☆10Feb 18, 2025Updated last year
- ☆10Apr 8, 2025Updated last year
- Jaeger is a quick and precise tool for detecting viruses in sequence assemblies.☆11Oct 14, 2026Updated 3 weeks ago
- R scripts for performing co-occurrence analyses☆36Jan 7, 2015Updated 11 years ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 9 months ago
- Simultaneous Classification and Motif Identification(eCAMI)☆11Nov 21, 2021Updated 4 years ago
- ☆21Apr 1, 2025Updated last year
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆71Sep 14, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- R package to perform calculations on data produced from quantitative stable isotope probing (qSIP) experiments☆10Oct 14, 2025Updated last year
- This is a repository for draft versions of a book called Meta-Analysis of Ecological Data in R (MaEDR)☆11Jul 28, 2022Updated 4 years ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆39Aug 28, 2026Updated 2 months ago
- Pipeline to run qiime2 with snakemake☆17Apr 17, 2020Updated 6 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆75Oct 6, 2020Updated 6 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆32Feb 23, 2018Updated 8 years ago