pereiramemo / AGS-and-ACN-toolsLinks
Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data
☆14Updated 11 months ago
Alternatives and similar repositories for AGS-and-ACN-tools
Users that are interested in AGS-and-ACN-tools are comparing it to the libraries listed below
Sorting:
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- ☆26Updated 2 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆19Updated 5 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆39Updated 3 years ago
- ☆13Updated 8 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆37Updated 2 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆39Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated this week
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Updated 3 years ago
- MAG Circularization Method☆32Updated last month
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Extract metadata from biosamples in NCBI☆16Updated 4 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆16Updated 2 weeks ago
- ☆17Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 7 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ☆14Updated 2 years ago
- ☆20Updated last year
- Discover and annotate the virome☆54Updated last month
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 4 months ago
- ☆61Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago