Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequencing data
☆128Feb 8, 2026Updated 3 weeks ago
Alternatives and similar repositories for BASALT
Users that are interested in BASALT are comparing it to the libraries listed below
Sorting:
- ☆69Mar 10, 2024Updated last year
- ☆63Feb 27, 2024Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆251Mar 20, 2025Updated 11 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated last year
- SemiBin: metagenomics binning with self-supervised deep learning☆155Feb 19, 2026Updated 2 weeks ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆87Dec 27, 2024Updated last year
- Read alignment statistics for metagenomics☆390Jan 16, 2026Updated last month
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Jun 3, 2025Updated 9 months ago
- ☆14Jan 12, 2026Updated last month
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 2 years ago
- ☆26Jun 20, 2023Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Sep 8, 2025Updated 5 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆219Jan 27, 2025Updated last year
- MAGScoT - a MAG scoring and refinement tool☆43Oct 10, 2024Updated last year
- DAS Tool☆168May 2, 2024Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆297Feb 3, 2026Updated last month
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆44Feb 5, 2026Updated last month
- ☆57Feb 18, 2026Updated 2 weeks ago
- The binning tool with dynamic contrastive learning and deep language model☆21Nov 14, 2025Updated 3 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated last month
- The viral taxonomic assignment pipeline☆42Feb 5, 2026Updated last month
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆460Jul 28, 2023Updated 2 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆71Updated this week
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆32Jan 19, 2026Updated last month
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆181Feb 26, 2026Updated last week
- Variational autoencoder for metagenomic binning☆317Feb 23, 2026Updated last week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆226Jan 20, 2026Updated last month
- Rapid comparison and dereplication of genomes☆327Nov 10, 2025Updated 3 months ago
- ☆32Apr 15, 2024Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22May 14, 2023Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month
- Improvement of metagenome-assembled genomes☆55Mar 17, 2020Updated 5 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆99Feb 8, 2026Updated 3 weeks ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆320Feb 19, 2026Updated last week
- ☆49Mar 13, 2024Updated last year
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆67Mar 2, 2022Updated 4 years ago
- geNomad: Identification of mobile genetic elements☆291Nov 10, 2025Updated 3 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆403Jun 12, 2025Updated 8 months ago