EMBL-PKU / BASALTLinks
Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequencing data
☆127Updated this week
Alternatives and similar repositories for BASALT
Users that are interested in BASALT are comparing it to the libraries listed below
Sorting:
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆71Updated 10 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Updated 4 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆248Updated 10 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆87Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- A pipeline for nanopore long-read metagenomic analysis.☆53Updated 2 months ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 7 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆154Updated 3 weeks ago
- fast phage annotation program☆193Updated last week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆287Updated last week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆104Updated 2 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 5 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆73Updated 5 years ago
- geNomad: Identification of mobile genetic elements☆286Updated 3 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆234Updated 4 months ago
- Horizontal gene transfer (HGT) identification pipeline☆67Updated 2 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆158Updated 9 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆218Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- ☆155Updated last year
- Pipeline for metabolic annotation of microbial genomes☆150Updated 10 months ago
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆18Updated last year
- ☆53Updated 5 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆166Updated 9 months ago
- Supporting code for uncultivated gut virus manuscript☆78Updated 2 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆143Updated 2 years ago
- DAS Tool☆169Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆146Updated last month
- Find endogenous viral elements in genomes☆21Updated 4 months ago