EMBL-PKU / BASALTLinks
☆121Updated last month
Alternatives and similar repositories for BASALT
Users that are interested in BASALT are comparing it to the libraries listed below
Sorting:
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆66Updated 8 months ago
- A pipeline for nanopore long-read metagenomic analysis.☆51Updated 2 weeks ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆51Updated 4 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆82Updated 11 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆100Updated 8 months ago
- ☆51Updated 4 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆81Updated 3 months ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆139Updated 2 years ago
- fast phage annotation program☆187Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆237Updated 8 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆147Updated last week
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆71Updated 5 years ago
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆17Updated last year
- geNomad: Identification of mobile genetic elements☆273Updated 3 weeks ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆208Updated 10 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 7 months ago
- Supporting code for uncultivated gut virus manuscript☆76Updated 2 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 5 months ago
- Generating iToL annotations from Spreadsheet or CSV files☆107Updated 5 years ago
- code repo for mobileOG-db☆41Updated last month
- EasyMultiOmics: An R package for comprehensive multi-omics data mining in systematic microbiome research☆97Updated this week
- A toolbox for comparative genomics.☆106Updated 4 years ago
- MicrobiomeReview☆11Updated 2 years ago
- Find endogenous viral elements in genomes☆20Updated 2 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 8 months ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆63Updated 3 years ago