donovan-h-parks / RefineMLinks
A toolbox for improving metagenome-assembled genomes.
☆63Updated 4 years ago
Alternatives and similar repositories for RefineM
Users that are interested in RefineM are comparing it to the libraries listed below
Sorting:
- Estimate metagenomic coverage and sequence diversity☆54Updated 10 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- ☆25Updated 6 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- GraftM - Rapid community profiles from metagenomes☆45Updated 11 months ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆54Updated last month
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- ☆52Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- ☆45Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 4 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated 2 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆71Updated last year
- Mapping-Assisted Targeted-Assembly for Metagenomics☆21Updated 2 months ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 3 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- ☆28Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago