donovan-h-parks / RefineM
A toolbox for improving metagenome-assembled genomes.
☆63Updated 3 years ago
Alternatives and similar repositories for RefineM:
Users that are interested in RefineM are comparing it to the libraries listed below
- Estimate metagenomic coverage and sequence diversity☆48Updated 6 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- ☆24Updated 6 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 10 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 4 months ago
- Improvement of metagenome-assembled genomes☆51Updated 4 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆36Updated 3 weeks ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- IS mapping software☆53Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- ☆48Updated 10 months ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 9 months ago
- Split Kmer Analysis☆63Updated 2 years ago
- ☆52Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- ☆19Updated 5 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆57Updated 5 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆44Updated 3 weeks ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- IslandPath standalone software☆31Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 7 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆55Updated 5 months ago