Alternatives and similar repositories for mebs:

Users that are interested in mebs are comparing it to the libraries listed below

• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆34Updated 3 years ago
• michaelkyu / MobMess
  ☆20Updated 3 years ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 11 months ago
• lauriebelch / SOCfinder
  ☆16Updated 4 months ago
• AlexanderLabWHOI / EukHeist
  ☆25Updated last year
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆52Updated 5 years ago
• Russel88 / MAGinator
  MAGinator - Accurate SNV calling and profiling of MAGs
  ☆22Updated 3 months ago
• timghaly / EcoFoldDB
  Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.
  ☆11Updated last month
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆49Updated 10 months ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆29Updated last year
• cmmr / Marker-MAGu
  Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes
  ☆19Updated last year
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆32Updated 8 months ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 2 weeks ago
• functional-dark-side / agnostos-wf
  ☆45Updated last year
• d-mcgrath / MetaPathPredict
  A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
  ☆17Updated 6 months ago
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆22Updated last year
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆39Updated last month
• RogerLab / Eukfinder
  Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
  ☆21Updated last week
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆32Updated 4 years ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆40Updated 6 months ago
• WrightonLabCSU / CAMPER
  This is a repository for CAMPER.
  ☆13Updated last year
• danielchang2002 / TaxiBGC_2022
  Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…
  ☆15Updated last year
• Chartiza / Microbiome
  scripts for microbiome analysis
  ☆11Updated 9 months ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆23Updated 9 months ago
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆13Updated 3 years ago
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆21Updated last year
• elizabethmcd / metabolisHMM
  Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
  ☆18Updated 3 years ago
• metagenopolis / CroCoDeEL
  CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
  ☆24Updated this week
• ericcapo / marky-coco
  Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes
  ☆10Updated 11 months ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆26Updated last year