rotheconrad / KEGGDecoder-binder
metabolic heatmap
☆20Updated 5 years ago
Alternatives and similar repositories for KEGGDecoder-binder:
Users that are interested in KEGGDecoder-binder are comparing it to the libraries listed below
- ☆20Updated 3 months ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 weeks ago
- MAG Circularization Method☆33Updated 2 years ago
- Pipeline for major biological analyses.☆34Updated 3 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 4 months ago
- A Shiny app for taxonomic abundance visualization☆7Updated last year
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆21Updated 3 years ago
- ☆45Updated last year
- MAGinator - Accurate SNV calling and profiling of MAGs☆22Updated 4 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 8 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆33Updated last year
- The Microbial Co-occurrence Network Explorer☆21Updated last year
- gutSMASH☆53Updated 4 months ago
- Automatic eukaryotic taxonomic classification☆28Updated 2 weeks ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆17Updated 6 months ago
- ☆18Updated 4 years ago
- Plot microbiome time series in parallel☆26Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆11Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆39Updated last month
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆20Updated 4 years ago
- This is a repository for CAMPER.☆13Updated last year
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago