Alternatives and similar repositories for KEGGDecoder-binder

Users that are interested in KEGGDecoder-binder are comparing it to the libraries listed below

• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆35Updated 3 years ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆27Updated 3 months ago
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆43Updated 6 months ago
• EBI-Metagenomics / kegg-pathways-completeness-tool
  ☆23Updated 5 months ago
• functional-dark-side / agnostos-wf
  ☆45Updated 2 years ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆34Updated last year
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 2 months ago
• medema-group / BiG-MAP
  ☆31Updated 2 weeks ago
• valdeanda / mebs
  Protocol for finding informative protein families and then using them to score omic samples
  ☆18Updated 2 years ago
• djw533 / hamburger
  HMmer Based UndeRstandinG of gene clustERs
  ☆14Updated last month
• kelwyres / Bactabolize
  ☆39Updated last month
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆59Updated 2 weeks ago
• agmcfarland / GeneGrouper
  CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
  ☆20Updated 8 months ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆26Updated last year
• elizabethmcd / metabolisHMM
  Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
  ☆18Updated 3 years ago
• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆29Updated 2 months ago
• WrightonLabCSU / CAMPER
  This is a repository for CAMPER.
  ☆14Updated last year
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 3 years ago
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆41Updated 3 months ago
• wclose / viralMetagenomicsPipeline
  Pipeline for metagenomic community analysis using DNA isolated from virus-like particles
  ☆12Updated 5 years ago
• genomicepidemiology / ARGprofiler
  A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets
  ☆27Updated 6 months ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆49Updated 5 months ago
• Russel88 / MAGinator
  MAGinator - Accurate SNV calling and profiling of MAGs
  ☆22Updated last month
• acvill / bracken_plot
  A Shiny app for taxonomic abundance visualization
  ☆7Updated last year
• segrelab / MiCoNE
  The Microbial Co-occurrence Network Explorer
  ☆21Updated last year
• mdmparis / defense-finder-models
  MacSyFinder models allowing for a systematic search of anti-phage systems
  ☆23Updated 5 months ago
• YDaiLab / MiMeNet
  ☆18Updated 4 years ago
• wilkelab / Opfi
  A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
  ☆21Updated 3 years ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated last year
• RogerLab / Eukfinder
  Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
  ☆25Updated 2 months ago