christophertbrown / bioscriptsLinks
some useful scripts for working with genomics and sequencing data
☆17Updated 6 years ago
Alternatives and similar repositories for bioscripts
Users that are interested in bioscripts are comparing it to the libraries listed below
Sorting:
- A pipeline for whole genome assembly☆16Updated 3 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- ☆44Updated last year
- A script for comparing old vs new versions of genome annotations☆21Updated 2 years ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆19Updated last year
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆22Updated 3 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Updated last year
- Plot microbiome time series in parallel☆27Updated 2 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 3 months ago
- ☆22Updated 2 years ago
- Prokaryotic Pangenome Analysis☆24Updated 4 years ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆30Updated 2 weeks ago
- TransAnnot - a fast transcriptome annotation pipeline☆20Updated last year
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- MAG Circularization Method☆32Updated 3 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- HMmer Based UndeRstandinG of gene clustERs☆15Updated 8 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Updated 3 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 4 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- metabolic heatmap☆22Updated 6 years ago
- ☆19Updated 5 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 3 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 3 years ago