Alternatives and similar repositories for bioscripts

Users that are interested in bioscripts are comparing it to the libraries listed below

• redsnic / WGA-LP
  A pipeline for whole genome assembly
  ☆16Updated 3 years ago
• moshi4 / plot_genome_align_fig
  Plot genome alignment figure using progressiveMauve & genoPlotR
  ☆22Updated 3 years ago
• soedinglab / transannot
  TransAnnot - a fast transcriptome annotation pipeline
  ☆19Updated 10 months ago
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆32Updated last year
• aweimann / traitar
  ☆22Updated 2 years ago
• EBI-Metagenomics / kegg-pathways-completeness-tool
  ☆28Updated 10 months ago
• lmlui / Jorg
  MAG Circularization Method
  ☆32Updated 3 weeks ago
• raymondkiu / bioinformatics-tools
  Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…
  ☆22Updated last month
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 2 years ago
• Ecogenomics / gtdb-species-clusters
  Toolkit for establishing, updating, and validating GTDB species clusters
  ☆20Updated last month
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• yosuken / ccfind
  ccfind - circular complete genome finder with clues of terminal redundancy
  ☆16Updated 5 years ago
• balabanmetin / uDance
  ☆42Updated last year
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆25Updated last year
• tylerbarnum / perchlorate-metagenome-2018
  Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …
  ☆10Updated 6 years ago
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆21Updated last year
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆39Updated last year
• santeripuranen / SpydrPick
  SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.
  ☆14Updated 3 years ago
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆66Updated 2 months ago
• rrwick / Compare-annotations
  A script for comparing old vs new versions of genome annotations
  ☆22Updated 2 years ago
• alexcritschristoph / soil_popgen
  Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes
  ☆16Updated 5 years ago
• katcoyte / MK-SpikeSeq
  Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples
  ☆12Updated 4 years ago
• NancyZxll / temperate-phage-active-prophage-detection
  detect temperate phage (active prophage) in assembled bacterial genome sequences
  ☆14Updated 3 years ago
• Arkadiy-Garber / MagicLamp
  A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
  ☆14Updated last year
• YDaiLab / MiMeNet
  ☆18Updated 4 years ago
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆27Updated 7 years ago
• 01life / ViromeFlowX
  ☆10Updated last month
• cmmr / Marker-MAGu
  Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes
  ☆22Updated this week