Scripts for calculating features and regression of prokaryote OGT
☆25Feb 13, 2024Updated 2 years ago
Alternatives and similar repositories for OGT_prediction
Users that are interested in OGT_prediction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆15Apr 4, 2026Updated 3 weeks ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆65Sep 30, 2020Updated 5 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated last year
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Horizontal gene transfer (HGT) identification pipeline☆71May 17, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆52Mar 29, 2026Updated last month
- Protocol for finding informative protein families and then using them to score omic samples☆19Jul 27, 2022Updated 3 years ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆54May 14, 2025Updated 11 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆45Feb 17, 2023Updated 3 years ago
- IslandPath standalone software☆37Nov 7, 2023Updated 2 years ago
- Helper scripts for making phylogenies☆15Jun 7, 2024Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 5 years ago
- A Swiss-Army-Knife for Bioinformaticians☆15Mar 20, 2026Updated last month
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.☆44Feb 11, 2023Updated 3 years ago
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆225Mar 24, 2026Updated last month
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆78Sep 30, 2024Updated last year
- antimicrobial peptide prediction in R☆33Dec 17, 2024Updated last year
- ☆23Mar 2, 2019Updated 7 years ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆66Apr 22, 2026Updated last week
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆26Dec 26, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Jun 3, 2025Updated 10 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆23May 14, 2023Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆30Jun 13, 2023Updated 2 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆25Nov 2, 2025Updated 6 months ago
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- A package to annotate protein sequences☆63Feb 23, 2025Updated last year
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆128Apr 19, 2026Updated last week
- ☆49Mar 13, 2024Updated 2 years ago
- Systematic search of all known anti-phage systems.☆159Apr 2, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆20Apr 24, 2025Updated last year
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆67Aug 12, 2019Updated 6 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆332Apr 20, 2026Updated last week
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆162Apr 23, 2025Updated last year