edgraham / BinSanityLinks
Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation
☆31Updated 4 years ago
Alternatives and similar repositories for BinSanity
Users that are interested in BinSanity are comparing it to the libraries listed below
Sorting:
- Strain Resolution ON Graphs☆50Updated 2 years ago
- MAG Circularization Method☆32Updated 2 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 6 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- ☆22Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- ☆45Updated 2 years ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Updated 6 months ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Updated 6 years ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆29Updated this week
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Updated 3 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Phasing for metagenomics using PacBio long reads☆16Updated 4 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- A script for comparing old vs new versions of genome annotations☆22Updated 2 years ago
- ☆20Updated 9 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- Discover and annotate the virome☆58Updated 3 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 5 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated last week
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago