Alternatives and similar repositories for SCycDB

Users that are interested in SCycDB are comparing it to the libraries listed below

• ZengJiaxiong / Phosphorus-cycling-database
  This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.
  ☆31Updated 3 years ago
• clb21565 / mobileOG-db
  code repo for mobileOG-db
  ☆40Updated 4 months ago
• liaochenlanruo / pgcgap
  The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
  ☆39Updated 2 years ago
• pereiramemo / AGS-and-ACN-tools
  Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data
  ☆14Updated 9 months ago
• allind / EukDetect
  ☆53Updated 3 months ago
• AlexanderLabWHOI / EukHeist
  ☆26Updated 2 years ago
• xthua / bacant
  This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
  ☆21Updated 2 years ago
• qichao1984 / NCyc
  ☆50Updated 4 years ago
• snayfach / MicrobeCensus
  MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
  ☆45Updated 5 years ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆53Updated 5 years ago
• biobakery / waafle
  http://huttenhower.sph.harvard.edu/waafle
  ☆20Updated 9 months ago
• joshuakirsch / pseudoR
  ☆16Updated 10 months ago
• Xiaoyu2425 / mEQO
  ☆17Updated 2 years ago
• rprops / MetaG_analysis_workflow
  ☆14Updated 7 years ago
• valflanza / accnet
  ☆13Updated 8 years ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆50Updated last year
• hoelzer / pocp
  Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.
  ☆26Updated 5 months ago
• wandreopoulos / deeplasmid
  ☆20Updated last year
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆44Updated 2 months ago
• wbazant / CORRAL
  ☆13Updated last year
• mdsufz / OrtSuite
  Prediction of microbial interactions in complex communities
  ☆11Updated last year
• ZhenyanZhang / ARG-global
  Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…
  ☆19Updated 3 years ago
• leylabmpi / Struo
  Ley Lab MetaGenome Profiler DataBase generator
  ☆49Updated 2 years ago
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆22Updated 2 years ago
• wanyuac / GeneMates
  An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
  ☆26Updated 3 years ago
• TingtZHENG / VirMiner
  Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates
  ☆18Updated 5 years ago
• KIT-IBG-5 / mdmcleaner
  MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
  ☆23Updated 2 years ago
• vinuesa / get_phylomarkers
  A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…
  ☆59Updated 8 months ago
• ziyewang / MetaBinner
  ☆58Updated last year
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆33Updated 3 weeks ago