☆20Apr 1, 2025Updated last year
Alternatives and similar repositories for SCycDB
Users that are interested in SCycDB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆38Jul 12, 2022Updated 4 years ago
- ☆63Dec 30, 2020Updated 5 years ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆69May 9, 2026Updated 3 months ago
- ☆14Jun 23, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆18Aug 7, 2026Updated last week
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deep…☆58Apr 30, 2026Updated 3 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆232Mar 24, 2026Updated 4 months ago
- ☆29Aug 2, 2026Updated 2 weeks ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆16Dec 20, 2024Updated last year
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆27Nov 3, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 8 months ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆19Mar 17, 2021Updated 5 years ago
- Tool to estimate genome quality of microbial eukaryotes☆45Updated this week
- Protocol for finding informative protein families and then using them to score omic samples☆19Jul 27, 2022Updated 4 years ago
- ☆52May 29, 2026Updated 2 months ago
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆10Oct 11, 2021Updated 4 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- some useful scripts for working with genomics and sequencing data☆18Oct 31, 2019Updated 6 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆17Jan 12, 2026Updated 7 months ago
- A tool to assemble high-quality phages from metagenomes.☆24May 22, 2026Updated 2 months ago
- ☆21Dec 15, 2020Updated 5 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆150Sep 21, 2023Updated 2 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- [ACL 2024] FactPICO☆12Feb 26, 2024Updated 2 years ago
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This is a repository for CAMPER.☆18Mar 18, 2024Updated 2 years ago
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 3 years ago
- MGnify API toolkit☆18Jan 31, 2025Updated last year
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year
- ☆23Jan 6, 2026Updated 7 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated 2 weeks ago
- ☆21Mar 15, 2023Updated 3 years ago