☆19Apr 1, 2025Updated last year
Alternatives and similar repositories for SCycDB
Users that are interested in SCycDB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆36Jul 12, 2022Updated 3 years ago
- ☆58Dec 30, 2020Updated 5 years ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆66Mar 2, 2022Updated 4 years ago
- A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deep…☆55Nov 15, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆16Dec 20, 2024Updated last year
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Apr 4, 2026Updated 2 weeks ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- ☆27Jan 30, 2025Updated last year
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆222Mar 24, 2026Updated 3 weeks ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆18Mar 17, 2021Updated 5 years ago
- Tool to estimate genome quality of microbial eukaryotes☆40Aug 1, 2025Updated 8 months ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Jul 27, 2022Updated 3 years ago
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆10Oct 11, 2021Updated 4 years ago
- ☆49Mar 13, 2024Updated 2 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 5 years ago
- ☆15Jan 12, 2026Updated 3 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆88Dec 27, 2024Updated last year
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆20Dec 15, 2020Updated 5 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆144Sep 21, 2023Updated 2 years ago
- ☆21Mar 15, 2023Updated 3 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆16Dec 11, 2024Updated last year
- dada2 formatted nifH database☆13May 17, 2024Updated last year
- ☆12Feb 26, 2024Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆72Jul 13, 2022Updated 3 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Nov 2, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated last week
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Feb 17, 2016Updated 10 years ago
- MGnify API toolkit☆19Jan 31, 2025Updated last year
- SemiBin: metagenomics binning with self-supervised deep learning☆158Feb 19, 2026Updated 2 months ago
- ☆13Mar 28, 2018Updated 8 years ago
- Microbial ecological network visualization clustering☆147Nov 20, 2025Updated 4 months ago
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year