lmc297 / bactaxRLinks
Bacterial taxonomy construction and evaluation in R
☆13Updated last year
Alternatives and similar repositories for bactaxR
Users that are interested in bactaxR are comparing it to the libraries listed below
Sorting:
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Calculate assocations between genes and traits☆23Updated 2 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- MAG Circularization Method☆33Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 8 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 4 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆30Updated 2 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- ☆16Updated 4 years ago
- plasmidVerify: plasmid contig verification tool☆13Updated 5 years ago
- ☆13Updated 7 years ago
- Order and orientation of complete bacterial genomes☆27Updated last year
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆22Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 11 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated 3 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last week
- ☆18Updated 3 years ago
- Gene Absence Presence Identification tool.☆26Updated 2 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆29Updated 3 weeks ago
- ☆25Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆24Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago