lmc297 / bactaxRLinks
Bacterial taxonomy construction and evaluation in R
☆15Updated 2 years ago
Alternatives and similar repositories for bactaxR
Users that are interested in bactaxR are comparing it to the libraries listed below
Sorting:
- Order and orientation of complete bacterial genomes☆29Updated 7 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆20Updated 2 years ago
- ☆22Updated 2 years ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- ☆13Updated 8 years ago
- Hybrid Assembler for Plasmids☆10Updated 3 years ago
- Intra-species bacterial contamination detection☆25Updated last week
- Calculate assocations between genes and traits☆29Updated 11 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 weeks ago
- MAG Circularization Method☆32Updated 3 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Predict plasmids from uncorrected long read data☆41Updated 3 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 3 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Interpretative standards for AMR genotypes☆27Updated last week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆35Updated last month
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated this week
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 9 months ago
- A script for comparing old vs new versions of genome annotations☆21Updated 2 years ago
- Metagenomic Analysis in Real Time☆29Updated 2 months ago
- Whole genome core alignments from multiple draft genomes☆13Updated 9 years ago
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- ☆26Updated 2 years ago