lmc297 / bactaxRLinks
Bacterial taxonomy construction and evaluation in R
☆15Updated 2 years ago
Alternatives and similar repositories for bactaxR
Users that are interested in bactaxR are comparing it to the libraries listed below
Sorting:
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆20Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 weeks ago
- Calculate assocations between genes and traits☆29Updated 10 months ago
- Hybrid Assembler for Plasmids☆10Updated 3 years ago
- ☆13Updated 8 years ago
- MAG Circularization Method☆32Updated 2 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Updated last year
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Updated 4 months ago
- ☆22Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- ☆25Updated last year
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Metagenomic Analysis in Real Time☆29Updated 2 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Bacterial GWAS analysis☆46Updated last week
- Order and orientation of complete bacterial genomes☆29Updated 6 months ago
- Intra-species bacterial contamination detection☆25Updated 11 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- ☆14Updated 2 years ago
- Interpretative standards for AMR genotypes☆26Updated last week
- Whole genome core alignments from multiple draft genomes☆13Updated 9 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆25Updated 5 months ago