A pipeline for running AMRfinderPlus and collating results into functional classes
☆102Aug 10, 2026Updated last week
Alternatives and similar repositories for abritamr
Users that are interested in abritamr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- Plasmid exploration of bacterial genomes☆26Mar 2, 2022Updated 4 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆182Apr 16, 2025Updated last year
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆181Aug 10, 2026Updated last week
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆383Aug 10, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 5 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Jul 17, 2026Updated last month
- A hybrid assembly and MAG recovery pipeline (and more!)☆116Aug 5, 2026Updated last week
- Mass screening of contigs for antimicrobial and virulence genes☆507Jul 17, 2026Updated last month
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆154Jul 24, 2026Updated 3 weeks ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆264Jun 11, 2026Updated 2 months ago
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- whole genome MLST analysis☆55Jun 17, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆666Aug 7, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆109Jan 22, 2026Updated 6 months ago
- Bifrost graph gene caller.☆99Jun 18, 2026Updated last month
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated last month
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Interpretative standards for AMR genotypes☆30Updated this week
- An updated pipeline for pangenome investigation☆370Jul 2, 2026Updated last month
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- 🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens☆111Updated this week
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scan contig files against PubMLST typing schemes☆297Jun 17, 2026Updated 2 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆205Jun 10, 2026Updated 2 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50May 18, 2026Updated 2 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆18Aug 7, 2026Updated last week
- Rapid haploid variant calling and core genome alignment☆595Dec 12, 2025Updated 8 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆94May 11, 2026Updated 3 months ago
- Antibiotic resistance prediction in minutes☆120Mar 27, 2026Updated 4 months ago
- Bacterial surveillance pipeline.☆28Aug 10, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆85Sep 13, 2023Updated 2 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65May 11, 2020Updated 6 years ago
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆157Oct 2, 2025Updated 10 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆522Aug 5, 2026Updated last week
- geNomad: Identification of mobile genetic elements☆328Mar 29, 2026Updated 4 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago