A pipeline for running AMRfinderPlus and collating results into functional classes
☆103Oct 29, 2026Updated last week
Alternatives and similar repositories for abritamr
Users that are interested in abritamr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆393Updated this week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆190Apr 16, 2025Updated last year
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆182Aug 10, 2026Updated 2 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Oct 29, 2026Updated last week
- whole genome MLST analysis☆57Jun 17, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆692Oct 11, 2026Updated 3 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆159Updated this week
- A pipeline for bioinformatics analysis of bacterial genomes☆33Oct 5, 2026Updated last month
- Scan contig files against PubMLST typing schemes☆307Jun 17, 2026Updated 4 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆520Jul 17, 2026Updated 3 months ago
- Plasmid exploration of bacterial genomes☆28Sep 27, 2026Updated last month
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆209Jun 10, 2026Updated 4 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 9 months ago
- An updated pipeline for pangenome investigation☆379Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆51Sep 4, 2026Updated 2 months ago
- Interpretative standards for AMR genotypes☆33Updated this week
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated 2 years ago
- Bifrost graph gene caller.☆102Aug 31, 2026Updated 2 months ago
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- BSR-Based Allele Calling Algorithm☆153Updated this week
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 months ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- A taxonomic classifier of plasmids☆32Jul 7, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆272Jun 11, 2026Updated 4 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆159Sep 2, 2026Updated 2 months ago
- Recombination-free trees☆76Jul 24, 2026Updated 3 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆526Aug 5, 2026Updated 3 months ago
- Antibiotic resistance prediction in minutes☆122Mar 27, 2026Updated 7 months ago
- hybrid assembly pipeline for bacterial genomes☆656Jul 29, 2026Updated 3 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆92Oct 27, 2026Updated last week
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 3 years ago
- "Reads to report" for public health and clinical microbiology☆145Dec 9, 2025Updated 10 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Oct 27, 2026Updated last week
- In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies☆10Aug 6, 2024Updated 2 years ago
- Rapid haploid variant calling and core genome alignment☆598Dec 12, 2025Updated 10 months ago
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆271Oct 14, 2026Updated 3 weeks ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 5 months ago